Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   CKO49_RS07805 Genome accession   NZ_CP025023
Coordinates   1622842..1623543 (-) Length   233 a.a.
NCBI ID   WP_072324129.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain XNO106     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1617842..1628543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKO49_RS07785 (CKO49_07785) rpsT 1618751..1619002 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  CKO49_RS07790 (CKO49_07790) holA 1619052..1620026 (-) 975 WP_001282558.1 DNA polymerase III subunit delta -
  CKO49_RS07795 (CKO49_07795) comEC 1620083..1622284 (-) 2202 WP_178137007.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CKO49_RS07800 (CKO49_07800) - 1622289..1622750 (-) 462 WP_000439693.1 ComE operon protein 2 -
  CKO49_RS07805 (CKO49_07805) comEA 1622842..1623543 (-) 702 WP_072324129.1 ComEA family DNA-binding protein Machinery gene
  CKO49_RS07810 (CKO49_07810) - 1623583..1624299 (-) 717 WP_031787282.1 class I SAM-dependent methyltransferase -
  CKO49_RS07815 (CKO49_07815) rsfS 1624302..1624655 (-) 354 WP_001088023.1 ribosome silencing factor -
  CKO49_RS07820 (CKO49_07820) yqeK 1624656..1625240 (-) 585 WP_031787283.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  CKO49_RS07825 (CKO49_07825) - 1625230..1625799 (-) 570 WP_000725169.1 nicotinate-nucleotide adenylyltransferase -
  CKO49_RS07830 (CKO49_07830) yhbY 1625802..1626092 (-) 291 WP_000955238.1 ribosome assembly RNA-binding protein YhbY -
  CKO49_RS07835 (CKO49_07835) aroE 1626097..1626903 (-) 807 WP_031787284.1 shikimate dehydrogenase -
  CKO49_RS07840 (CKO49_07840) yqeH 1626916..1628016 (-) 1101 WP_031787285.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26367.06 Da        Isoelectric Point: 9.7027

>NTDB_id=257240 CKO49_RS07805 WP_072324129.1 1622842..1623543(-) (comEA) [Staphylococcus argenteus strain XNO106]
MVLLYQFLLRYKDFFNQWKLYIISAVVLIMLLIGFIFWRQDEHTARDFENKDTALKQNTSENSSLSKLEDVQVKDGDNSK
NKGPVYIDVKGAVKHPNVYKMTSKDRVIDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHTKN
GNTKNGNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 702 bp        

>NTDB_id=257240 CKO49_RS07805 WP_072324129.1 1622842..1623543(-) (comEA) [Staphylococcus argenteus strain XNO106]
GTGGTTTTGTTGTATCAATTTTTATTACGCTATAAAGATTTTTTCAATCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGTTATTAATAGGTTTTATATTCTGGAGACAAGATGAACATACTGCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAACACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATATCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTACAAAATGACATCTAAGGATAGAGT
AATTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTTATACCTCATAAAGGACAAAAGAACGTTGAACCACAAATTGGAGTAAATAGTGTGCACACAAAAAAT
GGGAACACAAAAAATGGAAACACAAATAATACTAAAGTAAATCTAAATACGGCATCTGTATCTGAATTGATGTCTGTTCC
TGGAGTAGGTCAAGCTAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGA
AAAAAGTAAAAGGTTTTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(169-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

91.81

99.571

0.914
  comEA Staphylococcus aureus N315

91.81

99.571

0.914

Multiple sequence alignment