Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   CKO49_RS02540 Genome accession   NZ_CP025023
Coordinates   533056..533613 (+) Length   185 a.a.
NCBI ID   WP_369821465.1    Uniprot ID   -
Organism   Staphylococcus argenteus strain XNO106     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 528056..538613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKO49_RS02515 (CKO49_02515) cysE 529257..529904 (+) 648 WP_072291959.1 serine O-acetyltransferase -
  CKO49_RS02520 (CKO49_02520) cysS 529888..531288 (+) 1401 WP_031787937.1 cysteine--tRNA ligase -
  CKO49_RS02525 (CKO49_02525) - 531281..531685 (+) 405 WP_031787938.1 Mini-ribonuclease 3 -
  CKO49_RS02530 (CKO49_02530) rlmB 531693..532439 (+) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  CKO49_RS02535 (CKO49_02535) - 532439..532963 (+) 525 WP_000664733.1 NYN domain-containing protein -
  CKO49_RS02540 (CKO49_02540) sigH 533056..533613 (+) 558 WP_369821465.1 sigma-70 family RNA polymerase sigma factor Regulator
  CKO49_RS02545 (CKO49_02545) rpmG 533729..533872 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  CKO49_RS02550 (CKO49_02550) secE 533928..534110 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  CKO49_RS02555 (CKO49_02555) nusG 534123..534671 (+) 549 WP_001288299.1 transcription termination/antitermination protein NusG -
  CKO49_RS02560 (CKO49_02560) rplK 534852..535274 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  CKO49_RS02565 (CKO49_02565) rplA 535482..536174 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  CKO49_RS02575 (CKO49_02575) rplJ 536446..536946 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  CKO49_RS02580 (CKO49_02580) rplL 536990..537358 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  CKO49_RS02585 (CKO49_02585) - 537546..538154 (+) 609 WP_031787940.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 22544.44 Da        Isoelectric Point: 9.6758

>NTDB_id=257218 CKO49_RS02540 WP_369821465.1 533056..533613(+) (sigH) [Staphylococcus argenteus strain XNO106]
MSVHNNVKKHSNIVDENEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFKGEQPFVNYVQCLITS
VKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREIAQLM
NVKEKTIYNAIQRCKSKIRQHFKMF

Nucleotide


Download         Length: 558 bp        

>NTDB_id=257218 CKO49_RS02540 WP_369821465.1 533056..533613(+) (sigH) [Staphylococcus argenteus strain XNO106]
ATATCAGTGCATAATAATGTTAAAAAACACAGCAATATAGTTGACGAGAATGAATTTGAAAAGTTAATAACAGATTTGAA
ACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAGAGATACTAATAA
AGATATATAGGGCAACTAAAACATTCGATTTTAAAGGTGAGCAACCATTCGTGAATTATGTTCAATGTTTAATCACTTCA
GTTAAATACGATTACCTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATATAAAGTTATATA
TCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGATTTGTCAATTTA
AATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCAAGAGAGATTGCCCAATTGATG
AATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAAAATGTTTTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(22-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

69.022

99.459

0.686
  sigH Staphylococcus aureus MW2

67.935

99.459

0.676

Multiple sequence alignment