Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | CWD84_RS21400 | Genome accession | NZ_CP025001 |
| Coordinates | 4162922..4165357 (-) | Length | 811 a.a. |
| NCBI ID | WP_060963753.1 | Uniprot ID | A0AAI8HS63 |
| Organism | Bacillus siamensis strain SCSIO 05746 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4157922..4170357
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CWD84_RS21375 (CWD84_21370) | ispF | 4157968..4158444 (-) | 477 | WP_016935912.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| CWD84_RS21380 (CWD84_21375) | ispD | 4158437..4159135 (-) | 699 | WP_060965083.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| CWD84_RS21385 (CWD84_21380) | - | 4159149..4160249 (-) | 1101 | WP_016935914.1 | PIN/TRAM domain-containing protein | - |
| CWD84_RS21390 (CWD84_21385) | disA | 4160363..4161445 (-) | 1083 | WP_003156401.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| CWD84_RS21395 (CWD84_21390) | radA | 4161449..4162828 (-) | 1380 | WP_060963752.1 | DNA repair protein RadA | Machinery gene |
| CWD84_RS21400 (CWD84_21395) | clpC | 4162922..4165357 (-) | 2436 | WP_060963753.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| CWD84_RS21405 (CWD84_21400) | - | 4165354..4166445 (-) | 1092 | WP_060963754.1 | protein arginine kinase | - |
| CWD84_RS21410 (CWD84_21405) | - | 4166445..4167002 (-) | 558 | WP_016935918.1 | UvrB/UvrC motif-containing protein | - |
| CWD84_RS21415 (CWD84_21410) | ctsR | 4167016..4167480 (-) | 465 | WP_016935919.1 | transcriptional regulator CtsR | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90192.63 Da Isoelectric Point: 5.7558
>NTDB_id=257124 CWD84_RS21400 WP_060963753.1 4162922..4165357(-) (clpC) [Bacillus siamensis strain SCSIO 05746]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDVAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTDVAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=257124 CWD84_RS21400 WP_060963753.1 4162922..4165357(-) (clpC) [Bacillus siamensis strain SCSIO 05746]
ATGATGTTTGGAAGATTTACAGAGCGGGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTCAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACCTCTGTCCCTCAT
TACACGCCTCGAGCCAAAAAGGTAATAGAACTATCAATGGATGAAGCCAGAAAGCTCGGTCATTCTTATGTAGGAACAGA
GCACATACTTCTTGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTTCTGAATAATCTGGGTGTCAGTCTCAATA
AGGCGAGACAGCAGGTTCTGCAGCTTCTCGGAAGCAATGAGACAGGGACATCCGGAGCAGGGACAAATAGCAGCGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACCGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAATCCCGTTCTGATTGGGGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGTCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGCGATAAACGCGTA
ATGACATTAGACATGGGAACGGTTGTAGCCGGCACGAAATACCGCGGAGAATTTGAAGACCGTTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCGGGCAATATCATTTTATTCATTGACGAATTGCACACACTGATCGGAGCTGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCACTCGCTCGCGGAGAGCTTCAGTGCATTGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCTCTGGAGCGCCGCTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAGATCTTAAAAGGGCTTCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCTGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCTGGT
TCAAAAGTACGTCTCCGTTCCTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAGTTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCTTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCAATGGTG
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGTATTCT
GCACTCCCGCGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCGAAGGCTGTCAGACGTGCAAGAGCCGGTTTGAAGG
ATCCGAAACGTCCGATCGGTTCATTCATCTTCTTAGGCCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCTATTTTCGGTGATGAAGAAGCGATGATCAGAGTGGATATGTCCGAATATATGGAGAAACATTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACGGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTTCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAGGGACGCACTGTTGATTTCCGCAATACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAATTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAATTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACGGATGT
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGACTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAGCTTCTCAGAGGCAATATTGATAAAGGCCAGCACATCGTTCTTGACGTTGAAGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
ATGATGTTTGGAAGATTTACAGAGCGGGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCTTTAGAAGCGCTTG
GCCTCAATTCAGATAAAATGCAGAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACCTCTGTCCCTCAT
TACACGCCTCGAGCCAAAAAGGTAATAGAACTATCAATGGATGAAGCCAGAAAGCTCGGTCATTCTTATGTAGGAACAGA
GCACATACTTCTTGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTTCTGAATAATCTGGGTGTCAGTCTCAATA
AGGCGAGACAGCAGGTTCTGCAGCTTCTCGGAAGCAATGAGACAGGGACATCCGGAGCAGGGACAAATAGCAGCGCAAAC
ACGCCGACGCTTGACAGTCTGGCGCGTGATTTAACCGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAATCCCGTTCTGATTGGGGAACCGGGTGTAG
GTAAAACTGCGATTGCTGAAGGTCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGCGATAAACGCGTA
ATGACATTAGACATGGGAACGGTTGTAGCCGGCACGAAATACCGCGGAGAATTTGAAGACCGTTTGAAAAAAGTAATGGA
TGAAATACGTCAGGCGGGCAATATCATTTTATTCATTGACGAATTGCACACACTGATCGGAGCTGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCACTCGCTCGCGGAGAGCTTCAGTGCATTGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCTCTGGAGCGCCGCTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAGATCTTAAAAGGGCTTCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACCGATGAAGCGATCGAAG
CGGCGGTTAAATTGTCTGACCGTTATATTTCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCTGGT
TCAAAAGTACGTCTCCGTTCCTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAACTCGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAGTTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCTTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAGGAGAACTCCGAAGTTTCTGTAGAGGATATCGCAATGGTG
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGTATTCT
GCACTCCCGCGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCGAAGGCTGTCAGACGTGCAAGAGCCGGTTTGAAGG
ATCCGAAACGTCCGATCGGTTCATTCATCTTCTTAGGCCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCGCTGGCG
GAATCTATTTTCGGTGATGAAGAAGCGATGATCAGAGTGGATATGTCCGAATATATGGAGAAACATTCGACTTCACGTCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACGGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTTCTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAGGGACGCACTGTTGATTTCCGCAATACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTGGGCTTCAATGTGCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTCATGGGAGAGC
TGAAGCGTGCCTTCAGACCTGAATTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAATTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACGGATGT
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGACTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGACCGGTTATCAGAAGAGCTTCTCAGAGGCAATATTGATAAAGGCCAGCACATCGTTCTTGACGTTGAAGACGGC
GAATTTGTCGTAAAAACAACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.301 |
100 |
0.963 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.689 |
99.014 |
0.492 |
| clpC | Streptococcus thermophilus LMD-9 |
46.359 |
100 |
0.471 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.117 |
100 |
0.469 |
| clpC | Streptococcus mutans UA159 |
44.511 |
100 |
0.455 |
| clpC | Streptococcus pneumoniae D39 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae Rx1 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.141 |
100 |
0.453 |
| clpE | Streptococcus mutans UA159 |
53.929 |
80.025 |
0.432 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.568 |
81.628 |
0.429 |
| clpE | Streptococcus pneumoniae Rx1 |
52.568 |
81.628 |
0.429 |
| clpE | Streptococcus pneumoniae D39 |
52.568 |
81.628 |
0.429 |
| clpE | Streptococcus pneumoniae R6 |
52.568 |
81.628 |
0.429 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.145 |
84.834 |
0.425 |