Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   CWD84_RS20210 Genome accession   NZ_CP025001
Coordinates   3940912..3941310 (+) Length   132 a.a.
NCBI ID   WP_047476185.1    Uniprot ID   A0AAI8N1U7
Organism   Bacillus siamensis strain SCSIO 05746     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3935912..3946310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS20190 (CWD84_20185) - 3938311..3938673 (-) 363 WP_060963633.1 winged helix-turn-helix transcriptional regulator -
  CWD84_RS20195 (CWD84_20190) hxlA 3938906..3939541 (+) 636 WP_016936796.1 3-hexulose-6-phosphate synthase -
  CWD84_RS20200 (CWD84_20195) hxlB 3939538..3940095 (+) 558 WP_060963634.1 6-phospho-3-hexuloisomerase -
  CWD84_RS20205 (CWD84_20200) nucA/comI 3940453..3940890 (+) 438 WP_060963635.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  CWD84_RS20210 (CWD84_20205) nin/comJ 3940912..3941310 (+) 399 WP_047476185.1 competence protein ComJ Regulator
  CWD84_RS20215 (CWD84_20210) - 3941470..3941740 (-) 271 Protein_3965 family 1 glycosylhydrolase -
  CWD84_RS20220 (CWD84_20215) - 3941841..3942119 (-) 279 WP_406795067.1 YckD family protein -
  CWD84_RS20225 (CWD84_20220) - 3942237..3942671 (-) 435 WP_060963638.1 RDD family protein -
  CWD84_RS20230 (CWD84_20225) - 3942688..3943824 (-) 1137 WP_060965076.1 zinc-dependent alcohol dehydrogenase -
  CWD84_RS20235 (CWD84_20230) - 3943888..3945090 (-) 1203 WP_060963639.1 GTP-binding protein -
  CWD84_RS22925 - 3945238..3945367 (+) 130 Protein_3970 hypothetical protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14940.01 Da        Isoelectric Point: 4.6564

>NTDB_id=257121 CWD84_RS20210 WP_047476185.1 3940912..3941310(+) (nin/comJ) [Bacillus siamensis strain SCSIO 05746]
MIKSWKPQELIISYHQFTIFQKDSEPPVIDWTDEAIEKGFAEADGAVSFEARRNTKAFIVLRLNTNEPVPSYEKKAAVSF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAELSDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=257121 CWD84_RS20210 WP_047476185.1 3940912..3941310(+) (nin/comJ) [Bacillus siamensis strain SCSIO 05746]
TTGATTAAATCATGGAAACCGCAAGAACTTATCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCCGAACCGCC
TGTTATCGATTGGACGGATGAAGCCATTGAAAAAGGATTTGCGGAGGCTGACGGAGCTGTTTCTTTTGAAGCAAGGAGAA
ATACGAAGGCATTTATTGTCCTCAGGCTTAATACAAATGAACCGGTGCCATCCTATGAGAAAAAAGCGGCTGTTTCTTTT
GAAGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAACGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACTTGTTATTCAGTGCCTGCCGAATTATCCGACCTGCATGCAGATACGTATATTATCGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75

100

0.75

Multiple sequence alignment