Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CWD84_RS09670 Genome accession   NZ_CP025001
Coordinates   1772696..1773496 (+) Length   266 a.a.
NCBI ID   WP_003153177.1    Uniprot ID   I2C7K5
Organism   Bacillus siamensis strain SCSIO 05746     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1767696..1778496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWD84_RS09650 (CWD84_09650) - 1767819..1768664 (+) 846 WP_060964789.1 TlyA family RNA methyltransferase -
  CWD84_RS09655 (CWD84_09655) ahrC 1768761..1769210 (+) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  CWD84_RS09660 (CWD84_09660) recN 1769242..1770972 (+) 1731 WP_060964790.1 DNA repair protein RecN Machinery gene
  CWD84_RS09665 (CWD84_09665) spoIVB 1771136..1772416 (+) 1281 WP_060964791.1 SpoIVB peptidase -
  CWD84_RS09670 (CWD84_09670) spo0A 1772696..1773496 (+) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  CWD84_RS09680 (CWD84_09680) alr 1773639..1774820 (-) 1182 WP_060964792.1 alanine racemase -
  CWD84_RS09685 (CWD84_09685) - 1775006..1775218 (-) 213 WP_060964793.1 spore germination protein -
  CWD84_RS09690 (CWD84_09690) - 1775343..1775555 (-) 213 WP_060965136.1 spore germination protein -
  CWD84_RS09695 (CWD84_09695) - 1775680..1776798 (-) 1119 WP_016939012.1 NADH-dependent flavin oxidoreductase -
  CWD84_RS22345 - 1776893..1777030 (-) 138 WP_162829239.1 hypothetical protein -
  CWD84_RS09700 (CWD84_09700) - 1777323..1777955 (-) 633 WP_016939014.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29630.11 Da        Isoelectric Point: 6.1630

>NTDB_id=257090 CWD84_RS09670 WP_003153177.1 1772696..1773496(+) (spo0A) [Bacillus siamensis strain SCSIO 05746]
MEKIKVCVADDNRELVSLLSEYIEGQDDMEVIGVAYNGQECLSLFKDKNPDVLVLDIIMPHLDGLAVLERLRESELEKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNVSSVTHRAPSAQSSIIRSQPEPKRKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=257090 CWD84_RS09670 WP_003153177.1 1772696..1773496(+) (spo0A) [Bacillus siamensis strain SCSIO 05746]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTTGTAAGCCTGTTGAGTGAATATATAGAGGGACAGGA
TGATATGGAAGTAATCGGCGTTGCTTATAACGGACAGGAATGTCTTTCTTTGTTTAAAGATAAAAATCCTGATGTGCTCG
TTTTAGATATTATTATGCCGCATCTGGACGGACTTGCGGTTTTGGAGCGGCTCCGTGAATCAGAGCTTGAGAAACAGCCG
AACGTTATCATGCTGACGGCATTCGGTCAGGAAGACGTTACGAAAAAAGCCGTCGATTTAGGCGCGTCCTATTTCATCCT
GAAGCCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTAAGCGGAAATGTCAGCAGCGTCACACACCGTGCGC
CGTCTGCACAAAGCAGTATCATCCGCAGCCAGCCGGAGCCGAAACGGAAAAATCTCGATGCCAGTATTACAAGCATTATC
CATGAAATCGGTGTGCCTGCCCATATTAAAGGCTATCTTTATTTGCGGGAAGCCATTTCCATGGTGTACAACGATATTGA
ACTCCTCGGCAGCATCACAAAAGTCCTTTATCCCGACATCGCCAAAAAATTCAACACGACCGCAAGCCGTGTAGAACGGG
CCATCCGCCACGCGATTGAAGTCGCTTGGAGCAGGGGAAATATTGATTCCATTTCTTCGCTGTTCGGGTATACCGTAAGC
ATGACCAAAGCAAAACCAACCAACTCAGAATTCATCGCGATGGTTGCTGACAAGCTGAGATTGGAGCATAAAGCTTCGTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C7K5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

96.629

100

0.97

Multiple sequence alignment