Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   CU118_RS02075 Genome accession   NZ_CP024998
Coordinates   414687..415673 (+) Length   328 a.a.
NCBI ID   WP_054190362.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 55-99-44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 409687..420673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CU118_RS02050 (CU118_02050) opp4B 409854..410816 (+) 963 WP_054190365.1 oligopeptide ABC transporter permease -
  CU118_RS02055 (CU118_02055) opp4C 410828..411709 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  CU118_RS02060 (CU118_02060) trpS 411797..412786 (-) 990 WP_054190364.1 tryptophan--tRNA ligase -
  CU118_RS02065 (CU118_02065) spxA 413081..413476 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  CU118_RS02070 (CU118_02070) mecA 413847..414566 (+) 720 WP_054190363.1 adaptor protein MecA -
  CU118_RS02075 (CU118_02075) coiA 414687..415673 (+) 987 WP_054190362.1 competence protein CoiA Machinery gene
  CU118_RS02080 (CU118_02080) pepF 415721..417529 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  CU118_RS02085 (CU118_02085) yjbH 417989..418795 (-) 807 WP_054190361.1 protease adaptor protein YjbH -
  CU118_RS02090 (CU118_02090) - 418818..419183 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  CU118_RS02095 (CU118_02095) - 419287..419880 (-) 594 WP_054190360.1 CYTH domain-containing protein -
  CU118_RS02100 (CU118_02100) - 420066..420413 (+) 348 WP_054190359.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38854.26 Da        Isoelectric Point: 9.3244

>NTDB_id=257004 CU118_RS02075 WP_054190362.1 414687..415673(+) (coiA) [Staphylococcus aureus strain 55-99-44]
MLVALNEEKERVLATTALRKTQYFCPMCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
DIEPFLKEIKQIPDILINNKYVIELQYSPIPYKEILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFDLENKQIYKFHQLQSLGGNKYFAYKTKDCISELFNETPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLNDNLNYFKLKKFIVALESKTAIIEKLINNYLNISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=257004 CU118_RS02075 WP_054190362.1 414687..415673(+) (coiA) [Staphylococcus aureus strain 55-99-44]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACGCAATATTTTTGTCCGAT
GTGTGGGAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GATATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAAGAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGGTATAAAGTGAGTTGGTTATTAA
ATGATGTTGATTACTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAACCCAATCACTCGAAAACTT
CATACGTTTGATTTAGAAAATAAGCAAATATATAAATTTCATCAATTACAAAGTTTAGGCGGCAATAAGTATTTTGCGTA
TAAGACGAAAGACTGTATTAGTGAGTTGTTTAATGAGACGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATTAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAACAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAATGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

92.378

100

0.924
  coiA Staphylococcus aureus N315

92.378

100

0.924

Multiple sequence alignment