Detailed information NTG0256980

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: RC54_RS01655
• Genome accession: NZ_CP024996
• Coordinates: 373154..374017 (-)
• Length: 287 a.a.
• NCBI ID: WP_058894013.1
• Uniprot ID: -
• Organism: Herbaspirillum rubrisubalbicans strain DSM 11543
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 368154..379017

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RC54_RS01625 (RC54_01625)	argJ	368741..369976 (+)	1236	WP_061789492.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
RC54_RS01630 (RC54_01630)	-	369987..370862 (+)	876	WP_017451947.1	ATP-binding protein	-
RC54_RS01635 (RC54_01635)	-	370862..371275 (+)	414	WP_061789493.1	NUDIX domain-containing protein	-
RC54_RS01640 (RC54_01640)	yacG	371318..371503 (-)	186	WP_058894011.1	DNA gyrase inhibitor YacG	-
RC54_RS01645 (RC54_01645)	zapD	371539..372294 (-)	756	WP_017451950.1	cell division protein ZapD	-
RC54_RS01650 (RC54_01650)	coaE	372520..373140 (-)	621	WP_058894012.1	dephospho-CoA kinase	-
RC54_RS01655 (RC54_01655)	pilD	373154..374017 (-)	864	WP_058894013.1	A24 family peptidase	Machinery gene
RC54_RS01660 (RC54_01660)	-	374072..375325 (-)	1254	WP_058894014.1	type II secretion system F family protein	-
RC54_RS01665 (RC54_01665)	pilF	375312..376448 (-)	1137	WP_017451954.1	ATPase, T2SS/T4P/T4SS family	Machinery gene
RC54_RS01670 (RC54_01670)	-	376578..377867 (-)	1290	WP_061789494.1	HlyC/CorC family transporter	-
RC54_RS01680 (RC54_01680)	infA	378333..378596 (+)	264	WP_006713209.1	translation initiation factor IF-1	-
RC54_RS01685 (RC54_01685)	-	378671..378928 (+)	258	WP_058894017.1	hypothetical protein	-

Sequence

Protein

• Length: 287 a.a.
• Molecular weight: 30946.22 Da
• Isoelectric Point: 7.9511

>NTDB_id=256980 RC54_RS01655 WP_058894013.1 373154..374017(-) (pilD) [Herbaspirillum rubrisubalbicans strain DSM 11543]
MPFLEAYAVSGSPVLSGVAALLGLLVGSFLNVVIHRLPAMMLRESANFVAHERGEALPHTERYNLWLPHSACPHCATPLA
LHHKLPVLSWLLLRGRCAYCSAPISLRYPLVELLCAVLFALLAWRYGLGLTGLALMTGAAFLVALAFIDAQTMLLPDDLT
LPLLWLGLLVNLTHRLVPLQDAVLGAMAGYGVLWLIFWCFKLTTGKEGLGYGDFKLMAALGAWLGWQALPLVLLLASALG
AVLGLALMLGGRHQRGQAIPFGPCLALAGMLALVLGHDWLNLILYAF

Nucleotide

• Length: 864 bp

>NTDB_id=256980 RC54_RS01655 WP_058894013.1 373154..374017(-) (pilD) [Herbaspirillum rubrisubalbicans strain DSM 11543]
ATGCCTTTTCTGGAAGCCTATGCCGTCTCCGGCAGCCCCGTCCTGTCTGGCGTAGCTGCCCTGCTGGGCTTGCTGGTGGG
CAGCTTCCTCAACGTAGTGATCCATCGCCTGCCGGCCATGATGCTGCGCGAAAGCGCCAACTTCGTCGCCCACGAACGCG
GCGAGGCGCTGCCCCATACCGAACGCTACAACCTCTGGCTGCCGCACTCGGCCTGCCCGCATTGCGCCACGCCGCTGGCG
CTGCATCACAAGCTGCCGGTCTTGAGTTGGCTGCTGCTGCGCGGACGGTGCGCCTACTGCAGCGCGCCCATCAGCCTGCG
CTATCCGCTGGTGGAACTGCTGTGCGCCGTGCTCTTCGCGCTACTGGCCTGGCGCTATGGCCTGGGGCTGACCGGCTTGG
CGCTCATGACCGGCGCCGCCTTCCTGGTGGCGCTGGCCTTCATCGACGCCCAGACCATGCTGCTGCCCGACGACCTGACC
CTGCCGCTATTGTGGCTGGGCTTGCTGGTCAATCTCACGCATCGCCTGGTGCCGCTGCAGGATGCGGTGCTGGGGGCGAT
GGCCGGCTATGGCGTGCTGTGGCTGATCTTCTGGTGCTTCAAGCTGACGACCGGCAAGGAAGGCCTGGGCTATGGCGACT
TCAAGCTGATGGCCGCGCTGGGCGCCTGGCTGGGCTGGCAGGCGCTACCCCTGGTGCTGTTGCTGGCCTCGGCGCTGGGT
GCGGTGCTGGGCTTGGCGCTGATGCTGGGCGGACGGCATCAGCGCGGCCAGGCCATCCCCTTCGGCCCCTGCCTGGCCCT
GGCCGGAATGCTGGCGCTGGTACTGGGCCACGACTGGCTGAACCTGATTCTCTACGCTTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.239	93.38	0.488
pilD	Vibrio campbellii strain DS40M4	49.627	93.38	0.463
pilD	Neisseria gonorrhoeae MS11	50.385	90.592	0.456
pilD	Acinetobacter baumannii D1279779	40.78	98.258	0.401
pilD	Acinetobacter nosocomialis M2	40.071	98.258	0.394