Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX   Type   Regulator
Locus tag   CV098_RS11020 Genome accession   NZ_CP024958
Coordinates   2260748..2261239 (-) Length   163 a.a.
NCBI ID   WP_017865170.1    Uniprot ID   S6FB26
Organism   Lactococcus lactis subsp. lactis strain G423     
Function   activation of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2255748..2266239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV098_RS11000 (CV098_11000) polA 2255751..2258384 (-) 2634 WP_017865167.1 DNA polymerase I -
  CV098_RS11005 (CV098_11005) - 2258621..2259430 (+) 810 WP_017865168.1 Cof-type HAD-IIB family hydrolase -
  CV098_RS11010 (CV098_11010) - 2259430..2260353 (+) 924 WP_017865169.1 LacI family DNA-binding transcriptional regulator -
  CV098_RS11020 (CV098_11020) comX 2260748..2261239 (-) 492 WP_017865170.1 hypothetical protein Regulator
  CV098_RS11025 (CV098_11025) ezrA 2261498..2263228 (-) 1731 WP_017865171.1 septation ring formation regulator EzrA -
  CV098_RS11030 (CV098_11030) tsf 2263433..2264461 (-) 1029 WP_015427183.1 translation elongation factor Ts -
  CV098_RS11035 (CV098_11035) rpsB 2264581..2265348 (-) 768 WP_011836067.1 30S ribosomal protein S2 -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 19792.62 Da        Isoelectric Point: 5.3596

>NTDB_id=256836 CV098_RS11020 WP_017865170.1 2260748..2261239(-) (comX) [Lactococcus lactis subsp. lactis strain G423]
MTYYLEEEDFENLFSEMKPIVMKLMKQIRIRTWKIEDYLQEGMIILHLLLEEQSDGQKLHTKFKVKYHQRLIDELRRSYA
KKRSHDHFIGLDVYECSDWINSGDTSPDNEVVFNHLLAEVYEGLSAHYQDLLLRQMRGEELTRMERYRLREKIKAILFSE
DEE

Nucleotide


Download         Length: 492 bp        

>NTDB_id=256836 CV098_RS11020 WP_017865170.1 2260748..2261239(-) (comX) [Lactococcus lactis subsp. lactis strain G423]
ATGACATATTACTTGGAAGAAGAGGATTTTGAAAATCTTTTTTCAGAAATGAAACCTATAGTTATGAAATTAATGAAACA
AATTCGCATTAGAACATGGAAAATAGAGGATTATCTTCAAGAGGGGATGATTATTTTACATCTTCTATTAGAAGAGCAGA
GCGATGGTCAAAAGCTGCATACAAAATTTAAGGTAAAGTATCATCAAAGATTAATAGATGAATTAAGACGAAGTTATGCA
AAGAAACGAAGCCATGACCATTTTATAGGTTTAGATGTTTATGAATGCTCAGACTGGATAAATTCAGGTGATACTAGTCC
AGATAATGAAGTGGTCTTCAATCATTTGCTGGCAGAAGTATATGAAGGTTTGAGCGCACATTATCAAGACTTACTACTTC
GACAAATGCGAGGAGAAGAACTAACTCGCATGGAACGGTATCGCCTTCGTGAAAAAATAAAGGCTATTTTATTTTCAGAA
GACGAAGAGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S6FB26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comX Lactococcus lactis subsp. lactis strain DGCC12653

98.773

100

0.988
  comX Lactococcus lactis subsp. cremoris KW2

76.687

100

0.767

Multiple sequence alignment