Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB7   Type   Machinery gene
Locus tag   CV723_RS07580 Genome accession   NZ_CP024953
Coordinates   1557050..1557163 (-) Length   37 a.a.
NCBI ID   WP_001217873.1    Uniprot ID   G2MCV1
Organism   Helicobacter pylori strain 7.13     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1552050..1562163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV723_RS07560 (CV723_07580) - 1552716..1554128 (-) 1413 WP_001861341.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  CV723_RS07565 (CV723_07585) comB10 1554198..1555334 (-) 1137 WP_001045869.1 DNA type IV secretion system protein ComB10 Machinery gene
  CV723_RS07570 (CV723_07590) comB9 1555327..1556310 (-) 984 WP_001861340.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  CV723_RS07575 (CV723_07595) comB8 1556310..1557053 (-) 744 WP_000660520.1 virB8 family protein Machinery gene
  CV723_RS07580 (CV723_07600) comB7 1557050..1557163 (-) 114 WP_001217873.1 hypothetical protein Machinery gene
  CV723_RS07585 (CV723_07605) comB6 1557179..1558234 (-) 1056 WP_000786677.1 P-type conjugative transfer protein TrbL Machinery gene
  CV723_RS07590 (CV723_07610) - 1558242..1559237 (-) 996 WP_000468428.1 PDZ domain-containing protein -
  CV723_RS07595 (CV723_07615) - 1559237..1559539 (-) 303 WP_000347926.1 YbaB/EbfC family nucleoid-associated protein -
  CV723_RS07600 (CV723_07620) panD 1559542..1559895 (-) 354 WP_000142236.1 aspartate 1-decarboxylase -
  CV723_RS07605 (CV723_07625) - 1559885..1562110 (-) 2226 WP_001051506.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 37 a.a.        Molecular weight: 4325.25 Da        Isoelectric Point: 9.3572

>NTDB_id=256691 CV723_RS07580 WP_001217873.1 1557050..1557163(-) (comB7) [Helicobacter pylori strain 7.13]
MRIFFVIMGLVFFGCTSKVHEMKKSPCTLYENRLNLA

Nucleotide


Download         Length: 114 bp        

>NTDB_id=256691 CV723_RS07580 WP_001217873.1 1557050..1557163(-) (comB7) [Helicobacter pylori strain 7.13]
ATGAGAATTTTTTTTGTTATCATGGGACTTGTGTTTTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACCTTGTATGAAAACAGGTTAAATCTCGCATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB7 Helicobacter pylori P1

100

100

1

Multiple sequence alignment