Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CV724_RS05970 Genome accession   NZ_CP024952
Coordinates   1227755..1228159 (-) Length   134 a.a.
NCBI ID   WP_145727266.1    Uniprot ID   -
Organism   Helicobacter pylori strain B125A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1222755..1233159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV724_RS05920 (CV724_05940) - 1223106..1223870 (-) 765 WP_145727261.1 hypothetical protein -
  CV724_RS05925 (CV724_05945) - 1223892..1224071 (-) 180 WP_145727262.1 hypothetical protein -
  CV724_RS05930 (CV724_05950) - 1224061..1224846 (-) 786 WP_145727263.1 hypothetical protein -
  CV724_RS05935 (CV724_05955) - 1224846..1225227 (-) 382 Protein_1140 DUF1294 domain-containing protein -
  CV724_RS05945 (CV724_05965) - 1225536..1225802 (-) 267 WP_108288949.1 lysozyme -
  CV724_RS05950 (CV724_05970) - 1225790..1226164 (-) 375 WP_039093159.1 lysozyme -
  CV724_RS05955 (CV724_05975) - 1226221..1226787 (-) 567 WP_145727264.1 hypothetical protein -
  CV724_RS05960 (CV724_05980) - 1226771..1227076 (-) 306 WP_145727265.1 hypothetical protein -
  CV724_RS05965 (CV724_05985) - 1227262..1227624 (-) 363 WP_108310617.1 tetratricopeptide repeat protein -
  CV724_RS05970 (CV724_05990) dprB 1227755..1228159 (-) 405 WP_145727266.1 Holliday junction resolvase RuvX Machinery gene
  CV724_RS05975 (CV724_05995) dprA 1228156..1228956 (-) 801 WP_145727267.1 DNA-processing protein DprA Machinery gene
  CV724_RS05980 (CV724_06000) minE 1228968..1229201 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  CV724_RS05985 (CV724_06005) minD 1229198..1230004 (-) 807 WP_023526244.1 septum site-determining protein MinD -
  CV724_RS05990 (CV724_06010) ilvC 1230029..1231021 (-) 993 WP_145727268.1 ketol-acid reductoisomerase -
  CV724_RS06000 (CV724_06020) - 1231270..1232052 (+) 783 WP_145727269.1 NAD+ synthase -
  CV724_RS06005 (CV724_06025) - 1232049..1232987 (+) 939 WP_145727270.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15238.72 Da        Isoelectric Point: 8.7158

>NTDB_id=256661 CV724_RS05970 WP_145727266.1 1227755..1228159(-) (dprB) [Helicobacter pylori strain B125A]
MILACDVGLKRIGIAALLNGVVLPLEAILRRNKNQASRDLSDLLREKNIQVLVVGKPDESYADTNVRIEHFIKLVDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=256661 CV724_RS05970 WP_145727266.1 1227755..1228159(-) (dprB) [Helicobacter pylori strain B125A]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTGTCTTGCCTTTAGAAGC
GATTTTACGCCGCAACAAAAATCAGGCCTCTAGGGATTTGAGCGATTTGTTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCGATGAAAGCTATGCAGATACGAACGTGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955

Multiple sequence alignment