Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CV725_RS03915 Genome accession   NZ_CP024951
Coordinates   778619..779023 (+) Length   134 a.a.
NCBI ID   WP_000599159.1    Uniprot ID   -
Organism   Helicobacter pylori B128     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 773619..784023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV725_RS03880 (CV725_03885) - 773797..774735 (-) 939 WP_000833945.1 tetraacyldisaccharide 4'-kinase -
  CV725_RS03885 (CV725_03890) - 774732..775514 (-) 783 WP_001168242.1 NAD+ synthase -
  CV725_RS03895 (CV725_03900) ilvC 775763..776755 (+) 993 WP_001207748.1 ketol-acid reductoisomerase -
  CV725_RS03900 (CV725_03905) minD 776779..777585 (+) 807 WP_001019050.1 septum site-determining protein MinD -
  CV725_RS03905 (CV725_03910) minE 777582..777815 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  CV725_RS03910 (CV725_03915) dprA 777822..778622 (+) 801 WP_000835251.1 DNA-processing protein DprA Machinery gene
  CV725_RS03915 (CV725_03920) dprB 778619..779023 (+) 405 WP_000599159.1 Holliday junction resolvase RuvX Machinery gene
  CV725_RS03920 (CV725_03925) - 779150..779623 (+) 474 WP_013195909.1 tetratricopeptide repeat protein -
  CV725_RS03925 (CV725_03930) - 779811..780149 (+) 339 WP_000699916.1 hypothetical protein -
  CV725_RS03930 (CV725_03935) - 780133..780693 (+) 561 WP_000037134.1 hypothetical protein -
  CV725_RS03935 (CV725_03940) - 780826..781722 (-) 897 WP_001117136.1 RluA family pseudouridine synthase -
  CV725_RS03940 (CV725_03945) recJ 781722..783272 (-) 1551 WP_000810776.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15226.77 Da        Isoelectric Point: 8.8525

>NTDB_id=256638 CV725_RS03915 WP_000599159.1 778619..779023(+) (dprB) [Helicobacter pylori B128]
MILACDVGLKRIGIAALLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEHFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKC

Nucleotide


Download         Length: 405 bp        

>NTDB_id=256638 CV725_RS03915 WP_000599159.1 778619..779023(+) (dprB) [Helicobacter pylori B128]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTGCGCTTTTAAACGGCGTTATCTTGCCATTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGTAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAACATTTCATCAAACTTTTGGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGACT
CGCTATTAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTGAAAAAGT
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

97.727

98.507

0.963

Multiple sequence alignment