Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CV726_RS05930 Genome accession   NZ_CP024950
Coordinates   1212665..1213069 (-) Length   134 a.a.
NCBI ID   WP_145940501.1    Uniprot ID   -
Organism   Helicobacter pylori strain B130A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1207665..1218069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV726_RS05905 (CV726_05895) recJ 1208141..1209691 (+) 1551 WP_145940498.1 single-stranded-DNA-specific exonuclease RecJ -
  CV726_RS05910 (CV726_05900) - 1209691..1210572 (+) 882 WP_145940499.1 RluA family pseudouridine synthase -
  CV726_RS05915 (CV726_05905) - 1210683..1211243 (-) 561 WP_128030642.1 hypothetical protein -
  CV726_RS05920 (CV726_05910) - 1211227..1211565 (-) 339 WP_145940500.1 hypothetical protein -
  CV726_RS05925 (CV726_05915) - 1211694..1212389 (-) 696 WP_145940775.1 tetratricopeptide repeat protein -
  CV726_RS05930 (CV726_05920) dprB 1212665..1213069 (-) 405 WP_145940501.1 Holliday junction resolvase RuvX Machinery gene
  CV726_RS05935 (CV726_05925) dprA 1213066..1213866 (-) 801 WP_145940502.1 DNA-processing protein DprA Machinery gene
  CV726_RS05940 (CV726_05930) minE 1213873..1214106 (-) 234 WP_000051425.1 cell division topological specificity factor MinE -
  CV726_RS05945 (CV726_05935) minD 1214103..1214909 (-) 807 WP_003014933.1 septum site-determining protein MinD -
  CV726_RS05950 (CV726_05940) ilvC 1214934..1215926 (-) 993 WP_145940503.1 ketol-acid reductoisomerase -
  CV726_RS05960 (CV726_05950) - 1216175..1216957 (+) 783 WP_145940504.1 NAD+ synthase -
  CV726_RS05965 (CV726_05955) - 1216954..1217892 (+) 939 WP_145940505.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15241.65 Da        Isoelectric Point: 8.2762

>NTDB_id=256626 CV726_RS05930 WP_145940501.1 1212665..1213069(-) (dprB) [Helicobacter pylori strain B130A]
MILACDVGLKRIGIAALLNGVILPLEAILRQNRNQASRDLSDLLREKNIQMLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=256626 CV726_RS05930 WP_145940501.1 1212665..1213069(-) (dprB) [Helicobacter pylori strain B130A]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGCGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAATGCTAGTGG
TGGGCAAGCCCAATGAAAGCTACGCGGACACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

95.522

100

0.955

Multiple sequence alignment