Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CV727_RS05940 Genome accession   NZ_CP024949
Coordinates   1216830..1217234 (-) Length   134 a.a.
NCBI ID   WP_145820937.1    Uniprot ID   -
Organism   Helicobacter pylori strain B136A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1211830..1222234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV727_RS08360 - 1212078..1213306 (-) 1229 Protein_1117 hypothetical protein -
  CV727_RS05900 (CV727_05900) - 1213296..1214081 (-) 786 WP_145820926.1 hypothetical protein -
  CV727_RS05905 (CV727_05905) - 1214081..1214462 (-) 382 Protein_1119 DUF1294 domain-containing protein -
  CV727_RS08555 (CV727_05915) - 1214761..1214952 (-) 192 WP_227986161.1 lysozyme -
  CV727_RS05925 (CV727_05925) - 1215278..1215838 (-) 561 WP_145820932.1 hypothetical protein -
  CV727_RS05930 (CV727_05930) - 1215822..1216160 (-) 339 WP_145820934.1 hypothetical protein -
  CV727_RS05935 (CV727_05935) - 1216345..1216698 (-) 354 WP_145820936.1 tetratricopeptide repeat protein -
  CV727_RS05940 (CV727_05940) dprB 1216830..1217234 (-) 405 WP_145820937.1 Holliday junction resolvase RuvX Machinery gene
  CV727_RS05945 (CV727_05945) dprA 1217231..1218031 (-) 801 WP_145820939.1 DNA-processing protein DprA Machinery gene
  CV727_RS05950 (CV727_05950) minE 1218038..1218271 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  CV727_RS05955 (CV727_05955) minD 1218268..1219074 (-) 807 WP_001019055.1 septum site-determining protein MinD -
  CV727_RS05960 (CV727_05960) ilvC 1219098..1220090 (-) 993 WP_145821539.1 ketol-acid reductoisomerase -
  CV727_RS05970 (CV727_05970) - 1220340..1221122 (+) 783 WP_145820941.1 NAD+ synthase -
  CV727_RS05975 (CV727_05975) - 1221119..1222057 (+) 939 WP_145820943.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15260.72 Da        Isoelectric Point: 8.6990

>NTDB_id=256598 CV727_RS05940 WP_145820937.1 1216830..1217234(-) (dprB) [Helicobacter pylori strain B136A]
MILACDVGLKRIGIAVLLNGVILPLEAILRHNRNQASRDLSDLLREKNIQVLVVGKPNESYADTNARIEYFIKLLDFKGE
IVFINEDRSSIEAYENLEHLGKKNKRLATKDGRLDSLSACKILERYCQQVLKNH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=256598 CV727_RS05940 WP_145820937.1 1216830..1217234(-) (dprB) [Helicobacter pylori strain B136A]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTGTGCTTTTAAACGGCGTTATCTTGCCCTTAGAAGC
GATTTTGCGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAATATTCAGGTGCTAGTGG
TGGGCAAGCCTAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATATTTCATCAAGCTTTTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGACAGATCCAGTATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGCAAGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAATC
ATTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

94.776

100

0.948

Multiple sequence alignment