Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CV727_RS00300 | Genome accession | NZ_CP024949 |
| Coordinates | 71223..71798 (+) | Length | 191 a.a. |
| NCBI ID | WP_145819737.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B136A | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 66223..76798
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV727_RS00275 (CV727_00275) | uvrD | 66914..68959 (+) | 2046 | WP_194151549.1 | DNA helicase UvrD | - |
| CV727_RS00280 (CV727_00280) | flgA | 68956..69612 (+) | 657 | WP_145819735.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CV727_RS00285 (CV727_00285) | - | 69622..70185 (+) | 564 | WP_000780113.1 | UbiX family flavin prenyltransferase | - |
| CV727_RS00290 (CV727_00290) | coaD | 70185..70658 (+) | 474 | WP_001169276.1 | pantetheine-phosphate adenylyltransferase | - |
| CV727_RS00295 (CV727_00295) | tmk | 70660..71235 (+) | 576 | WP_000289720.1 | dTMP kinase | - |
| CV727_RS00300 (CV727_00300) | comFC | 71223..71798 (+) | 576 | WP_145819737.1 | ComF family protein | Machinery gene |
| CV727_RS00305 (CV727_00305) | - | 71831..73871 (+) | 2041 | Protein_60 | N-6 DNA methylase | - |
| CV727_RS08625 | - | 73868..74536 (+) | 669 | WP_341846665.1 | restriction endonuclease subunit S | - |
| CV727_RS08630 | - | 74508..75116 (+) | 609 | WP_341846666.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21351.92 Da Isoelectric Point: 8.8889
>NTDB_id=256590 CV727_RS00300 WP_145819737.1 71223..71798(+) (comFC) [Helicobacter pylori strain B136A]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKIMQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKIMQEQG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=256590 CV727_RS00300 WP_145819737.1 71223..71798(+) (comFC) [Helicobacter pylori strain B136A]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCATGCAAGAACAAGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAGGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCATGCAAGAACAAGGC
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGCCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTGG
AATTTCGCGCCAACAACCCACGGAATTTCACCTTCAAGGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
98.953 |
100 |
0.99 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |