Detailed information
Bioinformatically predicted
Overview
| Name | dprB | Type | Machinery gene |
| Locus tag | CV728_RS05695 | Genome accession | NZ_CP024948 |
| Coordinates | 1162997..1163401 (-) | Length | 134 a.a. |
| NCBI ID | WP_000599237.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B140 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1157997..1168401
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV728_RS08710 | - | 1158128..1159287 (-) | 1160 | Protein_1086 | hypothetical protein | - |
| CV728_RS08715 (CV728_05665) | - | 1159277..1160062 (-) | 786 | Protein_1087 | hypothetical protein | - |
| CV728_RS05660 (CV728_05670) | - | 1160062..1160448 (-) | 387 | WP_194151419.1 | DUF1294 domain-containing protein | - |
| CV728_RS08940 (CV728_05680) | - | 1160747..1161013 (-) | 267 | Protein_1089 | lysozyme | - |
| CV728_RS05680 (CV728_05690) | - | 1161433..1161993 (-) | 561 | WP_145817624.1 | hypothetical protein | - |
| CV728_RS05685 (CV728_05695) | - | 1161977..1162315 (-) | 339 | WP_101005683.1 | hypothetical protein | - |
| CV728_RS05690 (CV728_05700) | - | 1162500..1162859 (-) | 360 | WP_145817626.1 | tetratricopeptide repeat protein | - |
| CV728_RS05695 (CV728_05705) | dprB | 1162997..1163401 (-) | 405 | WP_000599237.1 | Holliday junction resolvase RuvX | Machinery gene |
| CV728_RS05700 (CV728_05710) | dprA | 1163398..1164198 (-) | 801 | WP_145817628.1 | DNA-processing protein DprA | Machinery gene |
| CV728_RS05705 (CV728_05715) | minE | 1164210..1164443 (-) | 234 | WP_145817631.1 | cell division topological specificity factor MinE | - |
| CV728_RS05710 (CV728_05720) | minD | 1164440..1165246 (-) | 807 | WP_145817632.1 | septum site-determining protein MinD | - |
| CV728_RS05715 (CV728_05725) | ilvC | 1165270..1166262 (-) | 993 | WP_145817634.1 | ketol-acid reductoisomerase | - |
| CV728_RS05725 (CV728_05735) | - | 1166511..1167293 (+) | 783 | WP_145817636.1 | NAD+ synthase | - |
| CV728_RS05730 (CV728_05740) | - | 1167290..1168228 (+) | 939 | WP_145817637.1 | tetraacyldisaccharide 4'-kinase | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 15271.68 Da Isoelectric Point: 8.2762
>NTDB_id=256573 CV728_RS05695 WP_000599237.1 1162997..1163401(-) (dprB) [Helicobacter pylori strain B140]
MILACDVGLKRIGIATLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQMLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
MILACDVGLKRIGIATLLNGVILPLEAILRQNRNQASRDLSDLLREKNIQMLVVGKPNESYADTNARIEHFIKLVDFKGE
IVFINEDNSSIEAYENLEHLGRKNKRLAIKDGRLDSLSACRILERYCQQVLKNH
Nucleotide
Download Length: 405 bp
>NTDB_id=256573 CV728_RS05695 WP_000599237.1 1162997..1163401(-) (dprB) [Helicobacter pylori strain B140]
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTACGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAATGCTAGTGG
TGGGCAAGCCCAATGAAAGCTACGCGGACACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG
ATGATTTTAGCATGCGATGTGGGGTTAAAACGCATTGGCATCGCTACGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATTTTACGCCAAAATAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAACATTCAAATGCTAGTGG
TGGGCAAGCCCAATGAAAGCTACGCGGACACGAACGCGCGCATTGAGCATTTCATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATCAATGAAGATAATTCCAGCATAGAAGCCTATGAAAATTTAGAGCATTTGGGTAGGAAAAACAAGCGGCT
CGCTATCAAAGACGGCCGGCTAGATTCTTTGAGCGCTTGCAGGATTTTAGAGCGCTATTGCCAACAGGTTTTAAAAAATC
ATTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| dprB | Helicobacter pylori 26695 |
94.776 |
100 |
0.948 |