Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CV728_RS00270 Genome accession   NZ_CP024948
Coordinates   60368..60943 (+) Length   191 a.a.
NCBI ID   WP_145816372.1    Uniprot ID   -
Organism   Helicobacter pylori strain B140     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 56057..67916 60368..60943 within 0


Gene organization within MGE regions


Location: 56057..67916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV728_RS00245 (CV728_00245) uvrD 56060..58104 (+) 2045 Protein_47 DNA helicase UvrD -
  CV728_RS00250 (CV728_00250) flgA 58101..58757 (+) 657 WP_145816368.1 flagellar basal body P-ring formation chaperone FlgA -
  CV728_RS00255 (CV728_00255) - 58767..59330 (+) 564 WP_050840359.1 UbiX family flavin prenyltransferase -
  CV728_RS00260 (CV728_00260) coaD 59330..59803 (+) 474 WP_001169242.1 pantetheine-phosphate adenylyltransferase -
  CV728_RS00265 (CV728_00265) tmk 59805..60380 (+) 576 WP_145816370.1 dTMP kinase -
  CV728_RS00270 (CV728_00270) comFC 60368..60943 (+) 576 WP_145816372.1 ComF family protein Machinery gene
  CV728_RS00275 (CV728_00275) - 60978..61370 (+) 393 Protein_53 VRR-NUC domain-containing protein -
  CV728_RS00280 (CV728_00280) - 61357..62118 (-) 762 WP_001183567.1 Eco47II family restriction endonuclease -
  CV728_RS00285 (CV728_00285) dcm 62087..63118 (-) 1032 WP_001913423.1 DNA (cytosine-5-)-methyltransferase -
  CV728_RS00290 (CV728_00290) - 63126..63701 (+) 576 WP_145816376.1 restriction endonuclease subunit S -
  CV728_RS00295 (CV728_00295) - 63667..64308 (+) 642 WP_145816378.1 restriction endonuclease subunit S -
  CV728_RS00300 (CV728_00300) polA 64374..67055 (+) 2682 WP_194151469.1 DNA polymerase I -
  CV728_RS00305 (CV728_00305) - 67170..67916 (+) 747 WP_079358752.1 outer membrane protein -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21323.84 Da        Isoelectric Point: 8.4513

>NTDB_id=256569 CV728_RS00270 WP_145816372.1 60368..60943(+) (comFC) [Helicobacter pylori strain B140]
MRCLTCLKLSFKPLCSNCLNDLPLSLRVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKALNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=256569 CV728_RS00270 WP_145816372.1 60368..60943(+) (comFC) [Helicobacter pylori strain B140]
ATGCGCTGTTTAACCTGTTTGAAGCTTTCTTTCAAGCCTCTTTGCTCAAATTGCCTAAACGATCTGCCCTTAAGCTTAAG
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGTAAATACG
CGTTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGTGCGGAATTTGTGAAAATCTTACAAGAACAGGGC
TTGAATATCCCCCTTTATGGCATCGCCATTGACGATAAAATCAAATCCTTTTACTCGCATTCCGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTATGGGACTTTAAGAGCCACAAATACTATTTCGTATGCGGGGAAAAGCTTAG
AATTTCGCGCCAATAACCCACGGGATTTCACTTTCAAAGGCGATGAGAATTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTTTAAACATTAAAGCGCACTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

94.241

100

0.942
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.458

100

0.366

Multiple sequence alignment