Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | CV729_RS01095 | Genome accession | NZ_CP024947 |
| Coordinates | 217757..218020 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584956.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain J182 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 212757..223020
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV729_RS01065 (CV729_01060) | groES | 213056..213412 (-) | 357 | WP_000671934.1 | co-chaperone GroES | - |
| CV729_RS01075 (CV729_01070) | dnaG | 213687..215366 (+) | 1680 | WP_145731628.1 | DNA primase | - |
| CV729_RS01080 (CV729_01075) | - | 215363..216415 (+) | 1053 | WP_145731630.1 | MnmA/TRMU family protein | - |
| CV729_RS01085 (CV729_01080) | - | 216504..217331 (+) | 828 | WP_145731632.1 | DUF5718 family protein | - |
| CV729_RS01090 (CV729_01085) | comB2 | 217476..217757 (+) | 282 | WP_001279601.1 | TrbC/VirB2 family protein | Machinery gene |
| CV729_RS01095 (CV729_01090) | comB3 | 217757..218020 (+) | 264 | WP_000584956.1 | hypothetical protein | Machinery gene |
| CV729_RS01100 (CV729_01095) | comB4 | 218022..220385 (+) | 2364 | WP_145731634.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| CV729_RS01110 (CV729_01105) | - | 220687..222027 (+) | 1341 | WP_194151359.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10006.08 Da Isoelectric Point: 9.5290
>NTDB_id=256551 CV729_RS01095 WP_000584956.1 217757..218020(+) (comB3) [Helicobacter pylori strain J182]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=256551 CV729_RS01095 WP_000584956.1 217757..218020(+) (comB3) [Helicobacter pylori strain J182]
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
ATGATTATCCTCTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGTTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGACATTGCAGATATTATCGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
100 |
100 |
1 |