Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   CV729_RS01090 Genome accession   NZ_CP024947
Coordinates   217476..217757 (+) Length   93 a.a.
NCBI ID   WP_001279601.1    Uniprot ID   A0AB74KP27
Organism   Helicobacter pylori strain J182     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 212476..222757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV729_RS01065 (CV729_01060) groES 213056..213412 (-) 357 WP_000671934.1 co-chaperone GroES -
  CV729_RS01075 (CV729_01070) dnaG 213687..215366 (+) 1680 WP_145731628.1 DNA primase -
  CV729_RS01080 (CV729_01075) - 215363..216415 (+) 1053 WP_145731630.1 MnmA/TRMU family protein -
  CV729_RS01085 (CV729_01080) - 216504..217331 (+) 828 WP_145731632.1 DUF5718 family protein -
  CV729_RS01090 (CV729_01085) comB2 217476..217757 (+) 282 WP_001279601.1 TrbC/VirB2 family protein Machinery gene
  CV729_RS01095 (CV729_01090) comB3 217757..218020 (+) 264 WP_000584956.1 hypothetical protein Machinery gene
  CV729_RS01100 (CV729_01095) comB4 218022..220385 (+) 2364 WP_145731634.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  CV729_RS01110 (CV729_01105) - 220687..222027 (+) 1341 WP_194151359.1 hypothetical protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10583.82 Da        Isoelectric Point: 8.0163

>NTDB_id=256550 CV729_RS01090 WP_001279601.1 217476..217757(+) (comB2) [Helicobacter pylori strain J182]
MSDHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=256550 CV729_RS01090 WP_001279601.1 217476..217757(+) (comB2) [Helicobacter pylori strain J182]
ATGTCCGATCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment