Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CV729_RS00280 | Genome accession | NZ_CP024947 |
| Coordinates | 62774..63349 (+) | Length | 191 a.a. |
| NCBI ID | WP_145731448.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain J182 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 57774..68349
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV729_RS00255 (CV729_00255) | uvrD | 58462..60510 (+) | 2049 | WP_145731440.1 | DNA helicase UvrD | - |
| CV729_RS00260 (CV729_00260) | flgA | 60507..61163 (+) | 657 | WP_145731442.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CV729_RS00265 (CV729_00265) | - | 61173..61736 (+) | 564 | WP_108313799.1 | UbiX family flavin prenyltransferase | - |
| CV729_RS00270 (CV729_00270) | coaD | 61736..62209 (+) | 474 | WP_145731444.1 | pantetheine-phosphate adenylyltransferase | - |
| CV729_RS00275 (CV729_00275) | tmk | 62211..62786 (+) | 576 | WP_145731446.1 | dTMP kinase | - |
| CV729_RS00280 (CV729_00280) | comFC | 62774..63349 (+) | 576 | WP_145731448.1 | ComF family protein | Machinery gene |
| CV729_RS00285 (CV729_00285) | - | 63382..65421 (+) | 2040 | WP_145731450.1 | N-6 DNA methylase | - |
| CV729_RS08485 | - | 65418..66041 (+) | 624 | WP_194151349.1 | restriction endonuclease subunit S | - |
| CV729_RS08490 | - | 66013..66615 (+) | 603 | WP_338153702.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21353.92 Da Isoelectric Point: 9.0940
>NTDB_id=256549 CV729_RS00280 WP_145731448.1 62774..63349(+) (comFC) [Helicobacter pylori strain J182]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRTNNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LNIPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRTNNPRNFTFKGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=256549 CV729_RS00280 WP_145731448.1 62774..63349(+) (comFC) [Helicobacter pylori strain J182]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGT
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTACCCTTGCTTTCTCAAAAAGCCGGTGCGGAGTTTGTGAAAATCCTGCAAGAAAAAGGT
TTGAATATTCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAACAACCCACGGAATTTCACCTTCAAAGGCGATGAAAGTTTAGATTATTTCTTGCTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
97.906 |
100 |
0.979 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.458 |
100 |
0.366 |