Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | CV730_RS00275 | Genome accession | NZ_CP024946 |
| Coordinates | 61734..62309 (+) | Length | 191 a.a. |
| NCBI ID | WP_145728058.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain B147 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 56734..67309
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV730_RS00250 (CV730_00250) | uvrD | 57425..59470 (+) | 2046 | WP_227979737.1 | DNA helicase UvrD | - |
| CV730_RS00255 (CV730_00255) | flgA | 59467..60123 (+) | 657 | WP_145728055.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| CV730_RS00260 (CV730_00260) | - | 60133..60696 (+) | 564 | WP_000780121.1 | UbiX family flavin prenyltransferase | - |
| CV730_RS00265 (CV730_00265) | coaD | 60696..61169 (+) | 474 | WP_145728056.1 | pantetheine-phosphate adenylyltransferase | - |
| CV730_RS00270 (CV730_00270) | tmk | 61171..61746 (+) | 576 | WP_145728057.1 | dTMP kinase | - |
| CV730_RS00275 (CV730_00275) | comFC | 61734..62309 (+) | 576 | WP_145728058.1 | ComF family protein | Machinery gene |
| CV730_RS00280 (CV730_00280) | - | 62342..64381 (+) | 2040 | WP_145728059.1 | N-6 DNA methylase | - |
| CV730_RS00285 (CV730_00285) | - | 64378..65022 (+) | 645 | WP_145728060.1 | restriction endonuclease subunit S | - |
| CV730_RS00290 (CV730_00290) | - | 64997..65602 (+) | 606 | WP_145728061.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21402.90 Da Isoelectric Point: 8.4513
>NTDB_id=256529 CV730_RS00275 WP_145728058.1 61734..62309(+) (comFC) [Helicobacter pylori strain B147]
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRTNNPRDFTFRGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
MRCLTCLKLSFKPLCPNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEQG
LNIPFYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGTLRATNTISYAGKSLEFRTNNPRDFTFRGDESLDYFLLDDII
TTGTTLKEALKYLKTLNIKTHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=256529 CV730_RS00275 WP_145728058.1 61734..62309(+) (comFC) [Helicobacter pylori strain B147]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGTTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAGGGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCTCTTTGCCCAAATTGCCTAAACGATCTGCCCTTAAGTTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGTTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCTTACAAGAACAAGGT
TTGAATATTCCCTTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCCGCCGCGCTTTTGAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGACTTTAAGAGCCACAAATACTATTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAGGGGCGATGAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAACGCATTTTGCGATCGCGCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
36.788 |
100 |
0.372 |