Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CUC15_RS11050 Genome accession   NZ_CP024848
Coordinates   2166609..2168318 (-) Length   569 a.a.
NCBI ID   WP_114916707.1    Uniprot ID   -
Organism   Oceanobacillus zhaokaii strain 160     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2161609..2173318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUC15_RS11030 (CUC15_11000) - 2162224..2162478 (+) 255 WP_114916704.1 DUF2627 family protein -
  CUC15_RS11035 (CUC15_11005) - 2162564..2163922 (+) 1359 WP_114916705.1 aspartate kinase -
  CUC15_RS11040 (CUC15_11010) spo0A 2164009..2164818 (-) 810 WP_278309214.1 sporulation transcription factor Spo0A -
  CUC15_RS11045 (CUC15_11015) spoIVB 2164995..2166266 (-) 1272 WP_114918442.1 SpoIVB peptidase -
  CUC15_RS11050 (CUC15_11020) recN 2166609..2168318 (-) 1710 WP_114916707.1 DNA repair protein RecN Machinery gene
  CUC15_RS11055 (CUC15_11025) argR 2168353..2168802 (-) 450 WP_114916708.1 transcriptional regulator ArgR -
  CUC15_RS11060 (CUC15_11030) - 2168829..2169641 (-) 813 WP_114916709.1 TlyA family RNA methyltransferase -
  CUC15_RS11065 (CUC15_11035) - 2169820..2170704 (-) 885 WP_114916710.1 polyprenyl synthetase family protein -
  CUC15_RS11070 (CUC15_11040) - 2170707..2170937 (-) 231 WP_114916711.1 exodeoxyribonuclease VII small subunit -
  CUC15_RS11075 (CUC15_11045) xseA 2170934..2172283 (-) 1350 WP_114916712.1 exodeoxyribonuclease VII large subunit -
  CUC15_RS11080 (CUC15_11050) folD 2172273..2173133 (-) 861 WP_114916713.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64757.65 Da        Isoelectric Point: 5.1009

>NTDB_id=255875 CUC15_RS11050 WP_114916707.1 2166609..2168318(-) (recN) [Oceanobacillus zhaokaii strain 160]
MLTELSIRDFAIIDEISINFNEGLTVLTGETGAGKSIIIDAIQLLAGGRGSVEFVRHGTKRAEIEGLFFIPNDKHAIYNV
GKQFGIEITDEQVVLERIITISGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMDPEHHLDLLDMYDPKSMAKAK
EEYSHLYGKLTSLKARYKKLSENEQEIAHRLDLLEFQKKELEQANLSPNEDVLLEEERSSLVNFERIYQSLQDSYTALYG
EQKGLEWLNQAQLALQDSKAYDPFITEKAEELSNHYYALEEITYALRSQLEELQYNPERLNEIENRLNEINRLKKKYGSN
VTEILEYMAKVEEELEQITNKDSHLSTLNQQIEEIEKDAYLEAVQLHDIRKKAANSLTKAIYKEFKGLYLEKASFAISFD
NEENHLNDGKYLLTKDGFDQVRFMISTNPGEPLKELSKVASGGELSRIMLALKKIFAKHQGVTSVIFDEVDTGVSGRVAQ
AIAEKIYQISVDSQVLCITHLPQVAAMADTHKFIKKVEKNKRTITQMEELTVKDQINELSRMITGTKLTETAKEHAKELL
ELASTFKAG

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=255875 CUC15_RS11050 WP_114916707.1 2166609..2168318(-) (recN) [Oceanobacillus zhaokaii strain 160]
ATGCTAACAGAATTATCAATTCGTGATTTTGCAATAATCGATGAAATTTCAATTAATTTTAATGAAGGGTTAACCGTGTT
GACAGGGGAAACAGGGGCTGGGAAGTCTATCATCATTGACGCAATCCAATTATTAGCTGGCGGTAGAGGATCAGTAGAGT
TTGTACGGCATGGTACGAAACGGGCGGAAATTGAAGGGTTATTTTTCATTCCTAATGACAAACATGCTATTTACAATGTT
GGCAAGCAATTTGGGATTGAGATTACAGATGAACAAGTCGTTCTCGAACGAATTATTACAATCTCTGGCAAAAGTATATG
CCGTGTTAATAGTAAGTTAGTTACCTTAGCTATATTACGGGAGTTCGGTAAGACATTGATAGATATACACAGTCAACATG
AAACCCAATCATTAATGGATCCAGAGCACCATCTCGATCTACTTGATATGTATGATCCGAAGTCAATGGCAAAAGCAAAA
GAAGAATATAGTCATTTATATGGCAAGCTAACTTCTCTAAAAGCACGTTATAAAAAGCTAAGTGAAAATGAACAAGAAAT
AGCACATCGCTTAGACCTATTAGAATTTCAAAAAAAAGAATTAGAACAGGCAAACCTTTCCCCAAATGAGGATGTCCTGC
TTGAAGAAGAAAGAAGTTCACTTGTTAACTTTGAACGCATTTATCAATCACTTCAGGATTCGTATACCGCTCTTTACGGA
GAACAAAAAGGGCTGGAGTGGCTAAATCAAGCACAATTAGCATTGCAGGATAGTAAAGCATATGATCCTTTTATTACGGA
GAAGGCAGAAGAGCTTTCGAATCATTATTACGCACTAGAGGAAATTACTTATGCACTCCGCAGTCAACTCGAAGAATTAC
AATATAACCCAGAGCGCTTGAATGAAATAGAGAATCGTTTAAATGAAATAAATAGATTGAAGAAAAAGTATGGATCAAAT
GTTACAGAAATACTTGAGTATATGGCGAAGGTCGAAGAGGAATTAGAACAAATTACAAATAAAGATTCCCATCTTTCTAC
ATTGAATCAACAAATAGAAGAGATAGAAAAAGATGCATACCTAGAAGCAGTACAGCTACATGATATTAGGAAGAAAGCAG
CCAATTCTTTAACGAAAGCAATTTATAAAGAATTTAAAGGACTGTATTTAGAGAAGGCTTCATTTGCTATTTCCTTTGAT
AACGAAGAAAATCATTTGAATGATGGCAAGTATTTACTAACTAAGGATGGATTCGACCAGGTTCGTTTTATGATTTCAAC
GAATCCAGGGGAACCGCTAAAAGAACTGAGCAAAGTAGCTTCTGGTGGAGAACTCTCCCGTATTATGCTAGCACTAAAAA
AAATCTTCGCAAAACATCAGGGTGTAACAAGTGTAATTTTTGATGAAGTAGATACAGGTGTAAGTGGACGAGTTGCCCAA
GCCATAGCTGAGAAAATATATCAGATTTCTGTTGATTCACAAGTTCTTTGTATTACGCATTTACCACAAGTAGCTGCTAT
GGCAGATACACATAAATTCATTAAAAAAGTTGAGAAAAACAAACGAACGATTACACAGATGGAAGAATTAACAGTAAAAG
ATCAAATTAATGAACTAAGTCGGATGATTACCGGAACAAAATTAACCGAAACTGCGAAAGAACACGCAAAAGAATTACTT
GAACTCGCCTCAACATTTAAAGCAGGTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.833

100

0.543

Multiple sequence alignment