Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CTW00_RS02690 Genome accession   NZ_CP024843
Coordinates   577197..577970 (+) Length   257 a.a.
NCBI ID   WP_016356271.1    Uniprot ID   A0A3L8GC69
Organism   Streptococcus iniae strain FP5228     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 572197..582970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTW00_RS10355 - 574831..574947 (-) 117 Protein_520 IS30 family transposase -
  CTW00_RS02680 (CTW00_00543) rlmH 575291..575770 (-) 480 WP_003100536.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CTW00_RS02685 (CTW00_00544) htrA 575916..577118 (+) 1203 WP_003100537.1 S1C family serine protease Regulator
  CTW00_RS02690 (CTW00_00545) spo0J 577197..577970 (+) 774 WP_016356271.1 ParB/RepB/Spo0J family partition protein Regulator
  CTW00_RS02695 (CTW00_00546) dnaA 578205..579560 (+) 1356 WP_003100539.1 chromosomal replication initiator protein DnaA -
  CTW00_RS02700 (CTW00_00547) dnaN 579716..580852 (+) 1137 WP_003100540.1 DNA polymerase III subunit beta -
  CTW00_RS02705 (CTW00_00548) - 580914..581111 (+) 198 WP_003100542.1 DUF951 family protein -
  CTW00_RS02710 (CTW00_00549) ychF 581340..582458 (+) 1119 WP_003100545.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29021.40 Da        Isoelectric Point: 9.9391

>NTDB_id=255806 CTW00_RS02690 WP_016356271.1 577197..577970(+) (spo0J) [Streptococcus iniae strain FP5228]
MTETYKKIAIKDIVANPYQPRLHFNEDELKELAASISLNGLIQPIIVRKSEVFGYELIAGERRLRASQIAGLTEIPAIIK
TISNSESMNQAIIENLQRSNLNPIEEAKAFQSIIDKNQLTHDQLAAYMGKSRPYITNTIRLLQLSTSVLDAIEKKTISSG
HARSLLALSTKEEQDKYLNYIISQNLNVRQTESLIRKSKVKKEKKKEKTLFTKAIENELAKSLGLAVSISLNKDGSGQCH
FTFHNDDELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=255806 CTW00_RS02690 WP_016356271.1 577197..577970(+) (spo0J) [Streptococcus iniae strain FP5228]
ATGACAGAAACATATAAAAAAATAGCCATTAAAGATATTGTTGCTAATCCTTATCAACCAAGATTACATTTTAATGAAGA
TGAGTTAAAAGAATTAGCAGCATCAATTTCTTTAAATGGTTTAATTCAGCCAATTATCGTCCGTAAATCTGAAGTCTTTG
GTTATGAATTAATTGCTGGTGAAAGAAGATTAAGAGCTTCTCAAATAGCAGGTTTAACTGAAATACCTGCTATTATCAAA
ACTATTTCTAATAGTGAGAGTATGAATCAAGCTATTATTGAAAATTTACAACGTTCCAATTTAAATCCAATAGAAGAAGC
TAAAGCTTTTCAAAGTATTATTGATAAAAATCAATTAACCCATGATCAATTAGCAGCATATATGGGGAAATCTAGACCTT
ATATTACAAATACAATTAGACTCTTACAATTATCCACATCTGTTCTAGATGCCATTGAAAAAAAGACAATAAGTTCTGGC
CACGCACGCAGCCTTCTAGCACTCTCAACTAAGGAAGAACAAGATAAATATCTTAATTATATTATCAGTCAAAACTTAAA
TGTTCGACAAACAGAATCTCTTATTCGAAAGAGTAAGGTTAAAAAAGAAAAGAAAAAAGAAAAGACACTTTTTACAAAAG
CTATTGAAAATGAGCTTGCTAAATCACTTGGACTAGCAGTTTCAATTTCCTTAAACAAAGATGGTAGTGGGCAGTGTCAT
TTTACTTTTCACAACGACGACGAATTAAACAGAATTATCAACAAGCTAAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(147-197)

ParB/Sulfiredoxin domain (ParB_N)

(7-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GC69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.25

99.611

0.56

Multiple sequence alignment