Detailed information NTG0025575

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: SDE_RS13395
• Genome accession: NC_007912
• Coordinates: 3241971..3243350 (+)
• Length: 459 a.a.
• NCBI ID: WP_011469032.1
• Uniprot ID: Q21HL4
• Organism: Saccharophagus degradans 2-40
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3236971..3248350

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SDE_RS13380 (Sde_2552)	-	3237391..3238296 (+)	906	WP_011469029.1	outer membrane protein assembly factor BamD	-
SDE_RS13385 (Sde_2553)	-	3238630..3240252 (-)	1623	WP_011469030.1	NAD+ synthase	-
SDE_RS13390 (Sde_2554)	-	3240385..3241971 (+)	1587	WP_011469031.1	sensor histidine kinase	-
SDE_RS13395 (Sde_2555)	pilR	3241971..3243350 (+)	1380	WP_011469032.1	sigma-54-dependent transcriptional regulator	Regulator
SDE_RS13400 (Sde_2556)	-	3243489..3244043 (+)	555	WP_011469033.1	GspH/FimT family protein	-
SDE_RS13405 (Sde_2557)	-	3244083..3244520 (-)	438	WP_011469034.1	type IV pilin protein	-

Sequence

Protein

• Length: 459 a.a.
• Molecular weight: 50868.22 Da
• Isoelectric Point: 5.2878

>NTDB_id=25575 SDE_RS13395 WP_011469032.1 3241971..3243350(+) (pilR) [Saccharophagus degradans 2-40]
MTTQPKVLVIDDEPDIRELLTITLSRMDIAADTAADVAEAKAQLSKNKYNLCLTDMKLPDGNGIDIVHYIQQHSPSLPVA
LITAHGNMDIAIQAMKAGAFDFLNKPVDLASLRKLVATAIASSELPEEECDENTRIIGKSPAIQKLTGSIKKLARSQAPV
YISGESGSGKELVARSIHELGPRSNKPFMPVNCGAIQKELMESELFGHKKGAFTGAVQDKQGIFQAAEGGTLFLDEVADL
PLDMQVKLLRAIQEKAVRPVGAEAEISTDVRILCATHKNLEELVQKGDFRQDLFYRLNVIQLAVPPLRDRTDDVEVLAKH
VLKKIIGPDETPPKLDKSAINALKQYSFPGNVRELENILERAYTLCEEDVIKDTDLQLSSSPKIESASSYTGTVNHYKQS
QQYESLDDYLAEIEKEILSEVLEQVRWNKTLAAKKLGISFRSFRYRLSKLGLAKDWQDE

Nucleotide

• Length: 1380 bp

>NTDB_id=25575 SDE_RS13395 WP_011469032.1 3241971..3243350(+) (pilR) [Saccharophagus degradans 2-40]
ATGACGACACAACCAAAAGTATTGGTTATTGATGACGAGCCAGATATTCGCGAACTGCTTACTATTACCTTAAGCAGAAT
GGACATAGCTGCCGATACTGCTGCCGATGTAGCTGAAGCTAAAGCCCAGCTAAGTAAAAACAAATACAATTTATGCCTAA
CCGACATGAAACTGCCCGACGGCAACGGCATAGATATTGTGCATTATATTCAACAGCATTCGCCCAGCTTGCCGGTGGCG
CTAATAACCGCACACGGCAATATGGATATAGCAATTCAAGCCATGAAAGCTGGTGCATTTGACTTTCTAAATAAGCCCGT
CGACCTAGCCAGCCTGCGTAAACTCGTTGCCACGGCTATTGCATCTAGCGAACTACCCGAAGAGGAATGCGACGAAAATA
CTCGCATTATTGGCAAGTCTCCAGCCATACAAAAATTGACGGGCAGTATTAAAAAGCTAGCCCGCTCACAGGCGCCTGTT
TACATAAGTGGCGAATCCGGTAGCGGTAAAGAATTAGTCGCACGCTCAATCCACGAGCTTGGCCCCCGCAGCAACAAACC
GTTTATGCCCGTTAATTGCGGCGCCATCCAAAAAGAACTAATGGAAAGTGAATTGTTTGGTCACAAAAAAGGGGCTTTTA
CGGGGGCAGTGCAAGACAAACAAGGTATTTTTCAAGCTGCTGAAGGCGGTACGCTATTTCTAGATGAAGTTGCCGATTTG
CCGTTAGACATGCAAGTAAAATTACTACGTGCTATACAAGAAAAAGCGGTACGCCCCGTGGGTGCAGAAGCCGAAATAAG
CACCGATGTACGCATACTTTGCGCCACGCACAAAAACTTAGAAGAACTCGTTCAAAAAGGCGACTTCCGCCAAGATTTAT
TTTACAGACTTAACGTTATACAACTGGCCGTACCACCGCTTCGCGATCGCACAGATGACGTTGAAGTACTCGCCAAACAT
GTACTTAAAAAAATTATAGGCCCCGACGAAACACCGCCCAAATTAGATAAGAGCGCCATTAACGCGCTTAAACAATATAG
CTTCCCGGGCAACGTACGTGAGCTAGAAAATATTTTAGAGCGCGCTTACACGTTGTGTGAGGAAGATGTAATAAAAGACA
CAGACCTTCAGCTATCAAGTTCACCCAAAATAGAAAGCGCTTCTTCCTACACAGGAACGGTCAATCACTATAAACAATCC
CAGCAATACGAATCGTTGGACGACTACCTAGCAGAAATAGAAAAAGAAATATTAAGTGAAGTACTAGAACAAGTCCGCTG
GAATAAAACATTAGCAGCCAAAAAACTGGGCATCAGCTTTCGATCTTTTCGTTATCGACTAAGTAAACTCGGTTTGGCTA
AAGACTGGCAAGATGAATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (410-450)

• Sigma-54 interaction domain (Sigma54_activat) (136-302)

• Response regulator receiver domain (Response_reg) (7-116)

3D structure

• AlphaFold DB: Q21HL4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	59.823	98.693	0.59
pilR	Acinetobacter baumannii strain A118	50.855	100	0.519