Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   CUB85_RS15680 Genome accession   NZ_CP024797
Coordinates   3139995..3140639 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain TJ02     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3134995..3145639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUB85_RS15645 - 3136180..3136611 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  CUB85_RS15650 - 3136611..3136952 (+) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  CUB85_RS15655 - 3136945..3138426 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  CUB85_RS15660 - 3138432..3138908 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  CUB85_RS15665 - 3138908..3139192 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  CUB85_RS15670 mnhG 3139176..3139550 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  CUB85_RS15675 - 3139590..3139973 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  CUB85_RS15680 comA 3139995..3140639 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  CUB85_RS15685 - 3140720..3143019 (-) 2300 Protein_3004 histidine kinase -
  CUB85_RS15690 comX 3143033..3143206 (-) 174 WP_012118314.1 competence pheromone ComX -
  CUB85_RS15695 - 3143175..3144035 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  CUB85_RS15700 degQ 3144243..3144383 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  CUB85_RS15710 - 3144846..3145187 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=255520 CUB85_RS15680 WP_003152052.1 3139995..3140639(-) (comA) [Bacillus velezensis strain TJ02]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=255520 CUB85_RS15680 WP_003152052.1 3139995..3140639(-) (comA) [Bacillus velezensis strain TJ02]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment