Detailed information NTG0025549

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: RFER_RS08465
• Genome accession: NC_007908
• Coordinates: 1803828..1804922 (+)
• Length: 364 a.a.
• NCBI ID: WP_011463970.1
• Uniprot ID: Q21XV1
• Organism: Rhodoferax ferrireducens T118
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1798828..1809922

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RFER_RS08445 (Rfer_1668)	rsmD	1799121..1799747 (-)	627	WP_166485691.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
RFER_RS08450 (Rfer_1669)	-	1799797..1800768 (-)	972	WP_084795569.1	YihY/virulence factor BrkB family protein	-
RFER_RS08455 (Rfer_1670)	-	1800854..1802236 (-)	1383	WP_041791748.1	M16 family metallopeptidase	-
RFER_RS08460 (Rfer_1671)	-	1802269..1803798 (-)	1530	WP_011463969.1	M16 family metallopeptidase	-
RFER_RS08465 (Rfer_1672)	pilA	1803828..1804922 (+)	1095	WP_011463970.1	signal recognition particle-docking protein FtsY	Machinery gene
RFER_RS08470 (Rfer_1673)	-	1804999..1806030 (+)	1032	WP_011463971.1	GGDEF domain-containing protein	-
RFER_RS08475 (Rfer_1674)	-	1806093..1806764 (+)	672	WP_011463972.1	alpha/beta hydrolase	-
RFER_RS08480 (Rfer_1675)	-	1806843..1807460 (+)	618	WP_011463973.1	ParA family protein	-
RFER_RS08485 (Rfer_1676)	-	1807537..1807992 (+)	456	WP_011463974.1	MaoC family dehydratase	-
RFER_RS08490 (Rfer_1677)	-	1807969..1808454 (-)	486	WP_011463975.1	tRNA (cytidine(34)-2'-O)-methyltransferase	-
RFER_RS08495 (Rfer_1678)	-	1808464..1809168 (-)	705	WP_041790428.1	ComF family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 38281.21 Da
• Isoelectric Point: 7.1472

>NTDB_id=25549 RFER_RS08465 WP_011463970.1 1803828..1804922(+) (pilA) [Rhodoferax ferrireducens T118]
MFSFFKKKPPPTPVLPKSPDAATEPAGAATPIRSGSLIGSALVTPIDIPLPASVPPERQKWLDKLKAGLGKTANSISGVF
SGTRIDEALYEELEGALLMADTGVAATQYLLDDLRRKVKESGITHPVALKNILVASLTELLLPLEKPLVIGQHKPTVIMV
TGVNGAGKTTSIGKLTQHLAMHGASVLLAAADTFRAAAREQLGVWATRAGTSTDTPDHSVEIISQQGGDPAAVSFDAVSA
GKARGKDVVLVDTAGRLPTQLHLMEELRKIKRVVQKADATAPHEILLVIDGNTGQNALTQVKAFDEALGLTGLIVTKLDG
TAKGGVLAAIARERPVPVYFIGVGEQLEDLETFNAREFAQALLA

Nucleotide

• Length: 1095 bp

>NTDB_id=25549 RFER_RS08465 WP_011463970.1 1803828..1804922(+) (pilA) [Rhodoferax ferrireducens T118]
ATGTTCAGTTTTTTCAAAAAGAAACCTCCTCCCACCCCTGTATTGCCAAAGTCACCCGACGCGGCGACTGAGCCAGCGGG
CGCGGCAACACCCATCCGCAGTGGTTCCTTGATTGGCAGCGCCCTGGTCACGCCGATTGACATTCCCCTGCCCGCCAGTG
TGCCGCCTGAGCGGCAAAAGTGGCTGGACAAACTTAAAGCAGGCCTGGGCAAGACGGCCAACAGCATCTCCGGCGTTTTT
AGCGGTACCCGGATTGACGAGGCGCTCTACGAAGAGCTTGAAGGCGCGCTGCTGATGGCCGATACGGGGGTCGCGGCCAC
CCAGTACCTGCTCGATGATTTGCGGCGCAAGGTCAAGGAGAGTGGCATTACCCACCCGGTGGCCCTGAAAAACATTTTGG
TGGCAAGCCTCACCGAATTGCTGCTGCCACTGGAAAAGCCGCTGGTCATTGGGCAGCACAAGCCCACCGTCATCATGGTC
ACTGGTGTTAATGGTGCGGGCAAAACCACCTCGATCGGCAAGCTCACCCAGCACCTGGCGATGCACGGCGCTAGCGTACT
GCTGGCCGCTGCGGATACTTTCCGGGCGGCCGCGCGTGAGCAACTGGGCGTTTGGGCGACGCGAGCGGGCACCAGCACCG
ACACACCCGACCACAGCGTGGAGATCATCAGCCAGCAGGGTGGCGACCCGGCGGCCGTGAGCTTTGATGCGGTCAGCGCT
GGCAAAGCGCGTGGCAAAGACGTGGTTTTGGTCGATACCGCCGGACGCCTGCCAACCCAGCTGCACCTGATGGAAGAACT
GCGAAAGATCAAGCGCGTGGTGCAAAAAGCCGACGCCACGGCACCGCATGAAATCCTGCTGGTGATCGACGGCAACACCG
GTCAAAACGCCTTGACGCAAGTGAAGGCATTTGACGAGGCGCTGGGCCTGACGGGCCTGATCGTCACCAAGCTGGACGGC
ACCGCCAAGGGCGGCGTGCTGGCTGCCATAGCGCGGGAGCGGCCGGTGCCGGTGTACTTCATCGGCGTGGGCGAGCAGCT
TGAAGACCTTGAGACGTTTAATGCCCGTGAGTTTGCGCAGGCACTGTTGGCATGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (155-363)

• SRP54-type protein, helical bundle domain (SRP54_N) (75-137)

3D structure

• AlphaFold DB: Q21XV1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	59.416	84.615	0.503