Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   UTI89_RS11110 Genome accession   NC_007946
Coordinates   2216127..2216603 (+) Length   158 a.a.
NCBI ID   WP_001298074.1    Uniprot ID   -
Organism   Escherichia coli UTI89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2211127..2221603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UTI89_RS11085 (UTI89_C2270) - 2212025..2213095 (+) 1071 WP_000102631.1 patatin-like phospholipase family protein -
  UTI89_RS11090 (UTI89_C2271) - 2213231..2213908 (+) 678 WP_001362823.1 hypothetical protein -
  UTI89_RS11095 (UTI89_C2272) - 2213924..2214334 (+) 411 WP_000846704.1 hypothetical protein -
  UTI89_RS11100 (UTI89_C2273) - 2214555..2215376 (+) 822 WP_001234570.1 DUF932 domain-containing protein -
  UTI89_RS11105 (UTI89_C2275) - 2215639..2216112 (+) 474 WP_000855071.1 antirestriction protein -
  UTI89_RS11110 (UTI89_C2276) radC 2216127..2216603 (+) 477 WP_001298074.1 JAB domain-containing protein Machinery gene
  UTI89_RS11115 (UTI89_C2277) yeeT 2216672..2216893 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  UTI89_RS11120 (UTI89_C2278) cbeA 2216967..2217335 (+) 369 WP_001285586.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  UTI89_RS11125 (UTI89_C2279) cbtA 2217424..2217798 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  UTI89_RS11130 (UTI89_C2280) yeeW 2217795..2217989 (+) 195 WP_000988601.1 DUF5983 family protein -
  UTI89_RS28815 - 2218035..2218115 (+) 81 Protein_2144 hypothetical protein -
  UTI89_RS29840 - 2218604..2218786 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  UTI89_RS11145 (UTI89_C2282) tmaR 2218887..2219216 (-) 330 WP_000450409.1 DUF496 family protein -
  UTI89_RS11150 (UTI89_C2283) yeeA 2219388..2220446 (-) 1059 WP_001200890.1 FUSC family protein -
  UTI89_RS11155 (UTI89_C2284) sbmC 2220644..2221117 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17670.28 Da        Isoelectric Point: 7.2519

>NTDB_id=25534 UTI89_RS11110 WP_001298074.1 2216127..2216603(+) (radC) [Escherichia coli UTI89]
MQQISFLPGEMTPGERSHILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=25534 UTI89_RS11110 WP_001298074.1 2216127..2216603(+) (radC) [Escherichia coli UTI89]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCACATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGCCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment