Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   DSY_RS20260 Genome accession   NC_007907
Coordinates   4347453..4349210 (-) Length   585 a.a.
NCBI ID   WP_011461398.1    Uniprot ID   -
Organism   Desulfitobacterium hafniense Y51     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4342453..4354210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSY_RS20245 (DSY3809) - 4343754..4344635 (-) 882 WP_011461395.1 ABC transporter ATP-binding protein -
  DSY_RS20250 (DSY3810) - 4344622..4345563 (-) 942 WP_011461396.1 ABC transporter ATP-binding protein -
  DSY_RS20255 (DSY3811) rcrQ 4345603..4347456 (-) 1854 WP_011461397.1 ABC transporter ATP-binding protein Regulator
  DSY_RS20260 (DSY3812) rcrP 4347453..4349210 (-) 1758 WP_011461398.1 ABC transporter ATP-binding protein Regulator
  DSY_RS20265 (DSY3813) - 4349300..4349728 (-) 429 WP_011461399.1 MarR family winged helix-turn-helix transcriptional regulator -
  DSY_RS20270 (DSY3814) - 4349860..4350669 (-) 810 WP_011461400.1 CPBP family intramembrane glutamic endopeptidase -
  DSY_RS20275 (DSY3815) - 4350778..4352154 (-) 1377 WP_242661954.1 diguanylate cyclase domain-containing protein -
  DSY_RS20280 (DSY3816) - 4352346..4353938 (-) 1593 WP_035214105.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 63962.39 Da        Isoelectric Point: 5.4373

>NTDB_id=25534 DSY_RS20260 WP_011461398.1 4347453..4349210(-) (rcrP) [Desulfitobacterium hafniense Y51]
MLEIFKRLKAKEWLLAAFSLVFIVAQVWLDLKLPDYMSEITRLTQTPGSAISDIWAAGGYMLLCALGSLAAAIIVGFFAA
RIAATFSKELRSDMFAKVDSLSMEEIGRFSTASLITRSTNDITQVQMLITMGLQLVIKAPIMAVWAVTKISGKGLEWTAA
TGVALIVMIVVIAVIMVFVFPKFKKMQVLTDNLNRVTRENLTGLRSVRAYNAEDYQEEKFAKANDELTSTQLFTSRAMAL
MMPLISTVMNGLTLAIYWIGALLIGQAGAADKLTLFSNMVVFSSYAMQVIMSFMMIAMVFIMVPRASVSAKRINEVLDTE
PSIEEGTVTQGKPGVEGEVVFKQVGFMYPGASDYVLHDVSFTARKGETVAFIGSTGSGKSTLINLIPRFYDATEGEIVID
GVNIKEYNKEALHNKIGYVPQKAVMFKGTVDSNVNFGDNGLETTAEDIKQAISIAQGTEFVEQMDGQYEAAIAQGGTNVS
GGQKQRLAIARAVCRKPEIYIFDDSFSALDYKTDRTLRAALKKETAGVTSFIVAQRIGTIMDADQIIVLDEGKVVGHGTH
KELLESCQVYKEIALSQLSKEELAS

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=25534 DSY_RS20260 WP_011461398.1 4347453..4349210(-) (rcrP) [Desulfitobacterium hafniense Y51]
ATGCTCGAAATTTTTAAGCGTCTTAAAGCAAAGGAATGGCTGCTGGCGGCCTTCAGCCTTGTGTTCATTGTCGCGCAGGT
ATGGCTTGACCTCAAACTGCCCGATTACATGTCGGAGATTACCCGCTTAACCCAAACACCCGGCAGCGCCATCTCGGATA
TTTGGGCGGCAGGCGGTTACATGCTGCTGTGCGCGCTGGGAAGCCTTGCGGCAGCCATCATTGTCGGATTTTTTGCCGCC
CGCATTGCGGCCACGTTCTCCAAGGAACTGCGCAGCGATATGTTTGCCAAGGTGGATTCGTTATCTATGGAGGAAATCGG
CAGATTTTCCACCGCAAGCTTGATTACCCGCTCCACCAACGACATTACCCAGGTGCAAATGCTCATTACCATGGGGCTGC
AGCTTGTTATCAAAGCACCCATTATGGCGGTTTGGGCGGTCACCAAGATTTCGGGCAAAGGACTGGAATGGACGGCGGCC
ACCGGCGTGGCCTTGATCGTTATGATTGTTGTAATCGCGGTCATTATGGTTTTTGTTTTCCCGAAATTCAAAAAAATGCA
GGTGCTCACCGACAACCTCAACCGGGTCACCCGTGAAAATTTGACTGGTTTGCGAAGTGTGCGCGCCTATAACGCCGAGG
ACTATCAGGAAGAAAAGTTCGCAAAAGCAAACGATGAGCTGACTTCCACCCAGCTTTTTACAAGCCGGGCGATGGCCTTG
ATGATGCCGTTAATTTCCACCGTGATGAACGGGCTGACCCTCGCCATTTACTGGATTGGCGCTCTACTGATTGGGCAGGC
CGGAGCCGCGGATAAACTGACCTTGTTCTCCAACATGGTGGTCTTCTCGTCCTATGCCATGCAAGTGATTATGTCGTTTA
TGATGATTGCCATGGTCTTTATCATGGTACCCCGTGCTTCCGTATCGGCCAAGCGTATCAATGAGGTGCTGGACACCGAG
CCGTCTATTGAGGAGGGCACAGTCACACAGGGCAAGCCCGGTGTGGAGGGCGAAGTTGTGTTTAAGCAGGTGGGATTTAT
GTATCCCGGTGCTTCCGACTATGTACTTCATGATGTGAGTTTTACGGCGCGCAAGGGCGAAACCGTGGCCTTTATCGGTT
CCACCGGCAGTGGCAAAAGTACCCTTATCAATTTAATCCCCCGGTTTTACGATGCAACCGAGGGCGAGATAGTGATTGAT
GGCGTTAACATCAAAGAATACAACAAGGAAGCGCTCCATAATAAAATCGGTTATGTGCCGCAAAAAGCGGTCATGTTCAA
AGGAACCGTCGATTCCAATGTAAACTTTGGCGATAACGGTTTAGAAACCACAGCGGAGGATATCAAACAGGCGATCAGCA
TTGCCCAAGGGACAGAGTTTGTGGAACAGATGGACGGACAGTATGAGGCCGCCATTGCCCAAGGCGGCACGAATGTGTCC
GGCGGTCAAAAACAGCGGCTGGCCATTGCGCGGGCGGTCTGCCGCAAACCCGAAATCTATATTTTTGACGACAGCTTCTC
GGCGCTGGACTACAAAACCGACCGCACCCTGCGCGCCGCTTTGAAAAAAGAAACGGCCGGCGTCACAAGCTTTATTGTGG
CGCAGCGGATCGGAACGATTATGGACGCTGACCAGATTATCGTCCTGGATGAGGGCAAGGTTGTCGGTCACGGCACCCAT
AAGGAGCTTTTGGAAAGCTGTCAAGTTTACAAGGAAATTGCGCTATCACAGCTCAGCAAGGAGGAACTGGCATCATGA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(53-293)

ABC transporter (ABC_tran)

(356-505)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

55.444

100

0.566

Multiple sequence alignment