Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   DSY_RS20255 Genome accession   NC_007907
Coordinates   4345603..4347456 (-) Length   617 a.a.
NCBI ID   WP_011461397.1    Uniprot ID   Q24QU2
Organism   Desulfitobacterium hafniense Y51     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4340603..4352456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSY_RS20230 (DSY3807) - 4341503..4342105 (-) 603 WP_148206776.1 GTP pyrophosphokinase -
  DSY_RS28705 (DSY3808) - 4342349..4343740 (-) 1392 WP_050754237.1 ABC-2 transporter permease -
  DSY_RS20245 (DSY3809) - 4343754..4344635 (-) 882 WP_011461395.1 ABC transporter ATP-binding protein -
  DSY_RS20250 (DSY3810) - 4344622..4345563 (-) 942 WP_011461396.1 ABC transporter ATP-binding protein -
  DSY_RS20255 (DSY3811) rcrQ 4345603..4347456 (-) 1854 WP_011461397.1 ABC transporter ATP-binding protein Regulator
  DSY_RS20260 (DSY3812) rcrP 4347453..4349210 (-) 1758 WP_011461398.1 ABC transporter ATP-binding protein Regulator
  DSY_RS20265 (DSY3813) - 4349300..4349728 (-) 429 WP_011461399.1 MarR family winged helix-turn-helix transcriptional regulator -
  DSY_RS20270 (DSY3814) - 4349860..4350669 (-) 810 WP_011461400.1 CPBP family intramembrane glutamic endopeptidase -
  DSY_RS20275 (DSY3815) - 4350778..4352154 (-) 1377 WP_242661954.1 diguanylate cyclase domain-containing protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67799.47 Da        Isoelectric Point: 6.7773

>NTDB_id=25533 DSY_RS20255 WP_011461397.1 4345603..4347456(-) (rcrQ) [Desulfitobacterium hafniense Y51]
MSDNKQARTAGGGLGGPGARRGPVEKPLNFAETMGKLLRYCQQYLPAMVIALLFAAIGTLLQIIGPDKIKDLTNEIAKGL
PALLNNVPVLNSIDMTAVANIAWLLVLFYATSMLLSFVQSYMMATVTQKVSKKMRSDISQKINRLPLKYFDQTSYGDVLS
RVTNDVDAIGQTLNQSIGSLVTAITMFVGALIMMFYNNWILALTAIGASLLGFILMTFIMSKSQKHFVSQQNGLGAINGH
IEEMYAGHNVVKVYNHSKASKATFEDINGKLYNSAWKSQFLSGLMMPLMSFVGNLGYVAVCVVGAVLAMNGTITFGVIVA
FMIYIRLFTQPLSQIAQAFNNLQRTAAASERVFEFLGEAEMADERDKVKRLEDVRGDVEFSHVKFGYSPDKTIIHDFSAK
VKAGQKIAIVGPTGAGKTTIINLLMRFYELDGGEILIDGTPISQVHRENVHEQFSMVLQDTWLFEGTIKENIIYSQQGVT
DEQVIAACKAVGLHHFISTLPEGYNTVINDNVSLSEGQKQLITIARAMIADTPLLILDEATSSVDTRTERIVQEAMDKLT
RGCTSFVIAHRLSTIKNADLILVMKDGDIIESGNHEQLLAKNGFYAELYNSQFEQSA

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=25533 DSY_RS20255 WP_011461397.1 4345603..4347456(-) (rcrQ) [Desulfitobacterium hafniense Y51]
ATGAGTGACAACAAACAAGCAAGGACCGCTGGGGGCGGTTTAGGAGGTCCCGGTGCTCGCCGGGGTCCTGTCGAAAAACC
GCTGAACTTCGCGGAAACCATGGGGAAACTTCTGCGCTATTGCCAACAATACCTGCCGGCGATGGTCATCGCTTTGCTCT
TTGCCGCCATCGGAACGCTGCTGCAAATCATCGGCCCGGATAAAATCAAAGACTTGACCAATGAGATTGCCAAAGGGCTT
CCGGCTCTCCTGAACAATGTACCTGTCCTGAACAGCATCGACATGACGGCAGTGGCAAATATCGCTTGGCTCCTGGTGCT
CTTTTATGCCACGTCCATGCTGCTCAGTTTCGTGCAGAGTTATATGATGGCGACGGTCACACAGAAAGTTTCCAAGAAAA
TGCGCAGCGATATATCGCAAAAAATCAACCGCCTGCCCCTTAAATATTTTGATCAGACCAGCTACGGCGATGTACTCAGC
CGTGTGACCAACGATGTGGATGCCATCGGACAAACGCTCAACCAAAGCATAGGTTCCTTAGTTACAGCCATCACCATGTT
TGTCGGCGCACTGATCATGATGTTCTACAACAACTGGATTTTGGCACTGACCGCTATTGGCGCCAGCCTGCTTGGTTTTA
TACTGATGACGTTCATTATGAGCAAGTCCCAAAAGCACTTTGTTTCGCAACAAAACGGGCTGGGCGCAATTAACGGTCAT
ATTGAAGAAATGTACGCCGGTCACAATGTGGTCAAGGTGTATAACCACAGTAAGGCCTCAAAAGCCACCTTTGAAGACAT
CAACGGCAAGCTTTACAACAGCGCCTGGAAATCCCAGTTCCTGTCGGGTCTGATGATGCCGCTGATGAGCTTTGTAGGCA
ACCTCGGTTATGTGGCCGTATGCGTGGTCGGCGCGGTGCTTGCCATGAACGGAACCATCACTTTCGGCGTAATCGTGGCG
TTTATGATTTATATACGCCTGTTCACCCAGCCCCTATCGCAAATCGCCCAAGCCTTTAACAACCTGCAAAGAACTGCCGC
GGCCAGTGAGCGTGTCTTTGAGTTTCTTGGTGAAGCTGAAATGGCCGATGAAAGGGATAAAGTTAAAAGGCTCGAAGATG
TCCGGGGCGATGTGGAGTTTTCCCATGTCAAGTTTGGCTATTCGCCGGATAAGACCATCATTCATGACTTCTCGGCAAAG
GTCAAGGCAGGGCAAAAGATCGCCATTGTCGGACCCACCGGGGCGGGCAAGACCACGATCATCAACCTGCTCATGCGGTT
TTATGAATTGGACGGCGGTGAAATCCTGATTGATGGGACGCCCATCAGTCAAGTGCATCGTGAGAACGTCCACGAACAGT
TCTCCATGGTGTTGCAGGACACCTGGCTTTTTGAAGGTACAATTAAAGAGAACATCATTTACTCACAACAGGGCGTGACC
GATGAGCAGGTCATTGCGGCCTGCAAGGCGGTGGGGCTGCACCACTTCATCTCAACGCTGCCCGAGGGCTACAACACAGT
TATTAATGACAATGTCAGCCTGTCTGAGGGGCAAAAGCAGCTTATCACCATTGCCCGTGCCATGATTGCGGATACCCCCT
TGTTGATTTTGGACGAAGCGACAAGCTCGGTGGATACCCGCACAGAGCGCATTGTTCAGGAAGCGATGGATAAACTAACA
CGAGGATGTACCTCTTTTGTTATCGCCCACCGGCTTTCCACGATTAAGAACGCCGATCTGATCCTGGTGATGAAGGACGG
GGACATTATCGAAAGCGGAAACCACGAGCAGCTGCTGGCCAAAAACGGCTTCTATGCGGAGCTTTATAACAGCCAATTTG
AGCAGTCGGCGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(49-332)

ABC transporter (ABC_tran)

(395-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q24QU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.247

94.327

0.549

Multiple sequence alignment