Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DMB38_RS22530 Genome accession   NZ_CP029618
Coordinates   5073631..5074254 (-) Length   207 a.a.
NCBI ID   WP_125936692.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5068631..5079254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS22520 (DMB38_22535) - 5069397..5071022 (+) 1626 WP_125936691.1 succinic semialdehyde dehydrogenase -
  DMB38_RS22525 (DMB38_22540) - 5072049..5073605 (+) 1557 WP_240662415.1 hypothetical protein -
  DMB38_RS22530 (DMB38_22545) vraR 5073631..5074254 (-) 624 WP_125936692.1 response regulator transcription factor Regulator
  DMB38_RS22535 (DMB38_22550) - 5074251..5075615 (-) 1365 WP_125936693.1 sensor histidine kinase -
  DMB38_RS22540 (DMB38_22555) - 5075835..5076395 (+) 561 WP_125936694.1 heme-binding protein -
  DMB38_RS22545 (DMB38_22560) - 5076579..5077214 (+) 636 WP_206337726.1 ankyrin repeat domain-containing protein -
  DMB38_RS22550 (DMB38_22565) - 5077284..5077661 (+) 378 WP_125936695.1 VOC family protein -
  DMB38_RS22555 (DMB38_22570) - 5077747..5078577 (-) 831 WP_125936696.1 oxidoreductase -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 21709.99 Da        Isoelectric Point: 6.7278

>NTDB_id=255136 DMB38_RS22530 WP_125936692.1 5073631..5074254(-) (vraR) [Streptomyces sp. WAC 06738]
MTVRVLLCDDHAVVRAGLLALLSSAPDIDVVGEAGTGEEALAAAAKLRPDVVLMDLQLGPGMDGVTATRRIVAGLPGTRV
LVLTTYDTDADVTRAVGAGATGYLLKAERPEELFSAIHAAAEGRTVLSPPVADRVMAQLRTPRPALTDRERDILAQLARG
SSNREIARALFISEATVKTHLGRIYGKLGVDSRAAAVAVANEQRLLG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=255136 DMB38_RS22530 WP_125936692.1 5073631..5074254(-) (vraR) [Streptomyces sp. WAC 06738]
ATGACCGTCCGCGTACTGCTCTGCGACGACCACGCCGTCGTCCGCGCCGGGCTGCTCGCGCTGCTGTCGAGCGCCCCGGA
CATCGACGTCGTCGGCGAGGCCGGCACGGGAGAGGAGGCGCTCGCGGCGGCGGCGAAGCTGCGCCCGGACGTCGTGCTGA
TGGACCTCCAACTCGGCCCCGGCATGGACGGCGTGACGGCCACGCGCCGCATCGTCGCCGGACTCCCCGGCACCCGGGTG
CTGGTGCTCACGACGTACGACACGGACGCGGATGTCACCCGCGCGGTCGGCGCGGGCGCGACGGGCTATCTGCTGAAGGC
GGAACGGCCGGAGGAGCTGTTCTCAGCGATCCACGCGGCGGCGGAGGGCCGCACGGTGCTGTCGCCGCCGGTCGCGGACC
GCGTCATGGCCCAGCTCCGCACCCCGCGCCCGGCGCTGACGGACCGCGAGCGCGACATCCTGGCGCAGCTCGCCCGGGGC
AGCTCGAACCGGGAGATCGCGCGGGCGCTGTTCATCAGCGAGGCGACGGTGAAGACCCACCTGGGCCGGATCTACGGCAA
GTTGGGCGTGGACTCCCGCGCTGCCGCGGTGGCGGTCGCGAACGAGCAGCGGCTGCTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(145-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.627

100

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

36.697

100

0.386