Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DMB38_RS18810 Genome accession   NZ_CP029618
Coordinates   4333485..4334939 (-) Length   484 a.a.
NCBI ID   WP_125936167.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4328485..4339939
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS18790 (DMB38_18780) - 4328540..4330411 (-) 1872 WP_125936164.1 BACON domain-containing protein -
  DMB38_RS18795 (DMB38_18785) - 4330485..4331063 (-) 579 WP_125936165.1 phosphatase PAP2 family protein -
  DMB38_RS18800 (DMB38_18790) - 4331191..4332063 (+) 873 WP_125936166.1 hypothetical protein -
  DMB38_RS18805 (DMB38_18795) disA 4332250..4333374 (-) 1125 WP_047017067.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  DMB38_RS18810 (DMB38_18800) radA 4333485..4334939 (-) 1455 WP_125936167.1 DNA repair protein RadA Machinery gene
  DMB38_RS18815 (DMB38_18805) ilvD 4335100..4336953 (+) 1854 WP_125936168.1 dihydroxy-acid dehydratase -
  DMB38_RS18820 (DMB38_18810) - 4337074..4337577 (+) 504 WP_125936169.1 hypothetical protein -
  DMB38_RS18825 (DMB38_18815) - 4337626..4338216 (-) 591 WP_125936170.1 TetR/AcrR family transcriptional regulator -
  DMB38_RS18830 (DMB38_18820) - 4338333..4339547 (+) 1215 WP_125936171.1 MFS transporter -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 50591.98 Da        Isoelectric Point: 8.2469

>NTDB_id=255133 DMB38_RS18810 WP_125936167.1 4333485..4334939(-) (radA) [Streptomyces sp. WAC 06738]
MASRKSGGRDRPAYRCAECGWSTVKWLGRCPECQAWGTIEEVGAPAVKTTAAGRVTTSALPIAQVDARRVEARSTGVPEL
DRVLGGGLVPGAVVLMAGEPGVGKSTLLLDVAAKAAVGGERTLYVTGEESAGQVRLRADRIGALSDALYLAAETDLAAVL
AHLDEVKPALLVLDSVQTVASGEIDGAPGGMAQVREVAGALIRASKERGMATILVGHVTKDGAIAGPRLLEHLVDVVLHI
EGDRHARLRLVRGMKNRYGATDEVGCFELHDEGIIGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGDIRALSKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVARRLAEAARLGFTQALVPADPGKVPAGMKVREVADIGDALRALPAGRRRTGGGSREPAGGREPRESRQPE
EARR

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=255133 DMB38_RS18810 WP_125936167.1 4333485..4334939(-) (radA) [Streptomyces sp. WAC 06738]
ATGGCTTCCCGAAAGAGCGGCGGCAGGGACCGCCCCGCGTACCGCTGCGCCGAGTGCGGCTGGTCCACCGTGAAATGGCT
CGGCCGCTGCCCCGAGTGCCAGGCGTGGGGGACGATCGAGGAGGTCGGCGCGCCCGCGGTCAAGACCACGGCCGCCGGCC
GGGTCACGACGTCGGCGCTGCCCATCGCCCAGGTCGACGCCCGCCGCGTCGAGGCCCGCTCCACCGGCGTGCCGGAGCTG
GACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGCGCGGTGGTGCTGATGGCCGGCGAGCCCGGCGTGGGGAAGTCGACGCT
GCTGCTCGACGTCGCGGCGAAGGCCGCGGTCGGCGGCGAGCGCACGCTGTACGTGACCGGAGAGGAGTCCGCCGGCCAGG
TCCGGCTGCGGGCCGACCGCATCGGGGCGCTGAGCGACGCGCTGTATCTGGCCGCCGAGACCGACCTCGCCGCCGTCCTC
GCCCACCTCGACGAGGTCAAGCCCGCCCTGCTGGTGCTGGACTCCGTGCAGACCGTCGCCTCCGGCGAGATCGACGGCGC
CCCCGGGGGCATGGCCCAGGTGCGGGAGGTCGCCGGAGCGCTCATCCGGGCCTCCAAGGAGCGCGGGATGGCCACGATCC
TCGTCGGGCACGTGACGAAGGACGGCGCCATCGCTGGCCCCCGCCTGCTGGAGCACCTGGTGGACGTCGTGCTGCACATC
GAGGGCGACCGGCACGCCCGGCTGCGGCTGGTCCGCGGCATGAAGAACAGGTACGGCGCGACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCATCGGCCTCGCCGACCCCAGCGGCCTCTTCCTCACCCGGCGGGACGAGCCCGTGCCCG
GGACCTGCCTGACGGTGACCCTGGAGGGCCGCAGGCCGCTGGTCGCGGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCCCCCCGGCGCACCACGTCGGGGCTCGAGACCTCCCGGGTCTCGATGATGCTGGCCGTGCTGGAGCAGCGCGGCGA
CATCCGCGCGCTCTCCAAGCGGGACATCTACAGCGCCACCGTCGGCGGGGTGAAGCTCTCCGAGCCGGCCGCCGACCTGG
CCGTCGCGCTCGCCCTGGCCAGCGCCGCCAGCGACACCCCGCTGCCGAAGAACCTGGTCGCGATCGGCGAGGTGGGGCTC
GCCGGCGAGGTGCGGCGGGTGACCGGGGTGGCCAGGCGGCTGGCGGAGGCGGCCCGGCTGGGGTTCACGCAGGCGCTCGT
ACCGGCGGATCCGGGCAAGGTCCCCGCAGGCATGAAAGTCCGGGAAGTCGCGGACATAGGGGACGCGTTGCGCGCGCTGC
CCGCCGGCCGGCGGCGCACCGGAGGCGGGTCCCGGGAGCCGGCCGGAGGGAGGGAGCCGAGGGAGTCCCGGCAGCCCGAG
GAGGCGCGCCGGTAG

Domains

Predicted by InterProScan.

AAA domain (AAA_25)

(75-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae TIGR4

42.826

93.595

0.401
  radA Streptococcus pneumoniae D39

42.826

93.595

0.401
  radA Streptococcus pneumoniae R6

42.826

93.595

0.401
  radA Streptococcus pneumoniae Rx1

42.826

93.595

0.401
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.699

93.388

0.399
  radA Streptococcus mitis SK321

44.235

87.81

0.388
  radA Streptococcus mitis NCTC 12261

44

87.81

0.386

Multiple sequence alignment