Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DMB38_RS15625 Genome accession   NZ_CP029618
Coordinates   3644181..3644780 (-) Length   199 a.a.
NCBI ID   WP_125935713.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3639181..3649780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS15605 (DMB38_15605) - 3639424..3640851 (-) 1428 WP_240662265.1 hypothetical protein -
  DMB38_RS15610 (DMB38_15610) - 3640986..3641633 (-) 648 WP_240662267.1 SigE family RNA polymerase sigma factor -
  DMB38_RS15615 (DMB38_15615) - 3641868..3643139 (-) 1272 WP_125935712.1 aspartate kinase -
  DMB38_RS15620 (DMB38_15620) - 3643408..3644070 (-) 663 WP_047016581.1 DUF5063 domain-containing protein -
  DMB38_RS15625 (DMB38_15625) recR 3644181..3644780 (-) 600 WP_125935713.1 recombination mediator RecR Machinery gene
  DMB38_RS15630 (DMB38_15630) - 3644928..3645263 (-) 336 WP_125935714.1 YbaB/EbfC family nucleoid-associated protein -
  DMB38_RS15635 (DMB38_15635) - 3645504..3647831 (-) 2328 WP_125935715.1 DNA polymerase III subunit gamma and tau -
  DMB38_RS36130 - 3648655..3648804 (-) 150 WP_164716011.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21736.03 Da        Isoelectric Point: 5.1686

>NTDB_id=255121 DMB38_RS15625 WP_125935713.1 3644181..3644780(-) (recR) [Streptomyces sp. WAC 06738]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPADVRRLAHALTEVKEKVRFCAVCGNVAQEEHCRICADPRRDPAV
LCVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMVK
AMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=255121 DMB38_RS15625 WP_125935713.1 3644181..3644780(-) (recR) [Streptomyces sp. WAC 06738]
GTGTACGAAGGCGTGGTCCAGGATCTGATCGACGAATTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGCAT
CGCCTTCCACATCCTGCAGGCCGAGCCGGCCGACGTCCGCCGGCTGGCGCATGCGCTGACCGAGGTGAAGGAGAAGGTCC
GGTTCTGCGCGGTCTGCGGGAACGTCGCGCAGGAGGAGCACTGCCGGATCTGCGCCGACCCGCGGCGCGACCCCGCCGTG
CTGTGCGTGGTCGAGGAGCCGAAGGACGTCGTGGCCATCGAGCGGACCCGTGAGTTCCGCGGGCGGTACCACGTGCTCGG
CGGCGCGATCAGCCCCATCGAGGGCGTCGGCCCGGACGACCTGCGGATACGGGAGCTGCTCGCCCGGCTCGCGGACGGCA
CCGTCACCGAACTGATCCTCGCCACCGACCCCAACCTCGAAGGCGAGGCCACGGCCACGTATCTGGCCCGCATGGTCAAG
GCCATGGGCCTGAAGGTGACCCGGCTGGCCAGCGGCCTGCCCGTCGGCGGCGATCTGGAGTATGCGGACGAGGTCACTCT
CGGCCGCGCCTTCGAAGGCAGGCGGTTGCTCGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

54.592

98.492

0.538
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

45.876

97.487

0.447