Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DMB38_RS00915 Genome accession   NZ_CP029618
Coordinates   259330..259989 (+) Length   219 a.a.
NCBI ID   WP_047014345.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 06738     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 254330..264989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMB38_RS00895 (DMB38_00905) purB 255021..256460 (+) 1440 WP_125933509.1 adenylosuccinate lyase -
  DMB38_RS00900 (DMB38_00910) - 256496..257236 (-) 741 WP_125933510.1 ABC transporter permease -
  DMB38_RS00905 (DMB38_00915) - 257240..257986 (-) 747 WP_125933511.1 ATP-binding cassette domain-containing protein -
  DMB38_RS00910 (DMB38_00920) - 258096..259325 (+) 1230 WP_240661885.1 histidine kinase -
  DMB38_RS00915 (DMB38_00925) vraR 259330..259989 (+) 660 WP_047014345.1 response regulator transcription factor Regulator
  DMB38_RS00920 (DMB38_00930) - 260034..261191 (+) 1158 WP_125933513.1 ROK family transcriptional regulator -
  DMB38_RS00925 (DMB38_00935) - 261303..262040 (-) 738 WP_125933514.1 GntR family transcriptional regulator -
  DMB38_RS00930 (DMB38_00940) - 262208..262954 (+) 747 WP_125933515.1 SDR family oxidoreductase -
  DMB38_RS00935 (DMB38_00945) sigJ 263003..263893 (-) 891 WP_125933516.1 RNA polymerase sigma factor SigJ -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23027.65 Da        Isoelectric Point: 4.9810

>NTDB_id=255090 DMB38_RS00915 WP_047014345.1 259330..259989(+) (vraR) [Streptomyces sp. WAC 06738]
MPVSVLLVDDDALVRAGLRAILEAQPDIEVAGEAADGAAVIPLVRRLAPDVIAMDVRMPLMDGIEATRAVLRAFPEPPKI
LVVTTFEEDRYVYGALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPAALRSLAAGHGNEEARAALAAARLTEREGEV
LRLIARGLTNAEIAAELVLGTETVKSHVSALLAKLGARDRTQAVITAYESGFVAPGAAG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=255090 DMB38_RS00915 WP_047014345.1 259330..259989(+) (vraR) [Streptomyces sp. WAC 06738]
GTGCCCGTCTCCGTCCTCCTCGTCGACGACGACGCCCTGGTCCGCGCCGGGCTGCGGGCGATCCTCGAAGCGCAGCCGGA
CATCGAGGTGGCCGGCGAGGCCGCCGACGGCGCGGCCGTGATCCCCCTCGTACGGCGACTGGCGCCGGACGTGATCGCGA
TGGACGTACGGATGCCGCTCATGGACGGCATCGAGGCCACCCGCGCCGTGCTCCGCGCCTTCCCCGAGCCGCCGAAGATC
CTGGTCGTGACCACCTTCGAGGAGGACCGGTACGTGTACGGGGCGCTGCGCGCCGGCGCCGACGGGTTCCTGCTCAAGCG
GGCCCGGCCGGCGGAGATCGTGCACGCGGTGCGGCTGGTCGCCGAGGGCGAGTCGCTGCTCTTCCCGGCCGCGCTGCGGT
CGCTGGCCGCCGGGCACGGCAACGAGGAGGCGCGCGCGGCGCTGGCGGCGGCCCGGCTGACCGAACGGGAGGGCGAGGTG
CTGCGGCTGATCGCCCGCGGGCTGACGAACGCCGAGATCGCCGCGGAGCTGGTGCTGGGCACCGAGACGGTCAAATCGCA
CGTCAGTGCGCTCCTGGCGAAGCTGGGAGCCCGGGACCGGACGCAGGCGGTGATCACGGCGTACGAGTCGGGGTTCGTCG
CTCCCGGCGCGGCCGGATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-207)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.192

97.26

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

35.965

100

0.374