Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   DMA15_RS20855 Genome accession   NZ_CP029617
Coordinates   4614890..4616299 (-) Length   469 a.a.
NCBI ID   WP_125514301.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4609890..4621299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS20835 (DMA15_20820) vraR 4610994..4611662 (+) 669 WP_276314360.1 response regulator transcription factor Regulator
  DMA15_RS20840 (DMA15_20825) - 4611961..4612560 (-) 600 Protein_4097 phosphatase PAP2 family protein -
  DMA15_RS20845 - 4612744..4613571 (+) 828 WP_125514299.1 hypothetical protein -
  DMA15_RS20850 (DMA15_20840) disA 4613686..4614810 (-) 1125 WP_125514300.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  DMA15_RS20855 (DMA15_20845) radA/sms 4614890..4616299 (-) 1410 WP_125514301.1 DNA repair protein RadA Machinery gene
  DMA15_RS20860 (DMA15_20850) - 4616547..4618433 (+) 1887 WP_240659880.1 hypothetical protein -
  DMA15_RS20865 (DMA15_20855) - 4618504..4619298 (-) 795 WP_346428949.1 hypothetical protein -
  DMA15_RS20870 (DMA15_20860) - 4619550..4620491 (+) 942 WP_125514304.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49772.94 Da        Isoelectric Point: 7.7226

>NTDB_id=255053 DMA15_RS20855 WP_125514301.1 4614890..4616299(-) (radA/sms) [Streptomyces sp. WAC 01529]
MAARTKSTKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSAVPIGEVDGRTATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVSAKAASEQHRTLYVTGEESASQVRLRADRIGAIDDHLYLAAETDLSAVL
GHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLQF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGIIGLADPSGLFLTRRAEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPTDPGRIPAGMKVIEVADMGEALRVLPRSRRREAPREEEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=255053 DMA15_RS20855 WP_125514301.1 4614890..4616299(-) (radA/sms) [Streptomyces sp. WAC 01529]
ATGGCTGCCCGTACGAAATCCACCAAGGACCGTCCGTCCTACCGCTGCACCGAGTGTGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAATGCCAGGCGTGGGGCACGGTCGAGGAGTATGGCGCGCCCGCGGTCCGCACCACCGCCCCCGGCC
GGGTCACCTCCTCCGCCGTCCCGATCGGCGAGGTCGACGGCCGCACGGCGACCGCGCGCTCCACCGGCGTGCCCGAGCTG
GACCGCGTGCTGGGCGGCGGACTCGTCCCCGGCGCGGTGGTGCTGCTGGCGGGCGAGCCGGGCGTGGGCAAGTCGACGCT
GCTGCTGGACGTCTCGGCGAAGGCGGCGAGCGAGCAGCACCGCACGCTCTATGTGACCGGCGAGGAGTCGGCGAGCCAGG
TCAGGCTGCGCGCCGACCGCATCGGCGCCATCGACGACCACCTCTATCTGGCCGCGGAGACCGATCTGTCCGCCGTCCTC
GGCCACTTGGACGCGGTCAAGCCCTCCCTCCTGGTCCTCGACTCCGTCCAGACGGTCGCCTCGCCGGAGATCGACGGCGC
GCCCGGCGGCATGGCGCAGGTCCGCGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGTCGACCCTCC
TGGTCGGCCACGTCACCAAGGACGGCGCTATCGCGGGCCCCCGCCTCCTGGAGCATCTCGTCGACGTGGTCCTCCAGTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTGGTCCGCGGCGTCAAGAACCGGTACGGCACGACGGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCATCGGCCTCGCCGACCCCAGCGGCCTCTTCCTCACCCGCCGCGCCGAGCCCGTCCCCG
GCACCTGCCTGACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTCGCCGAGGTCCAGGCGCTCACGGTCGACTCGCAGATC
CCGAGCCCCCGGCGCACCACGTCCGGCCTGGAGACGTCCCGCGTCTCGATGATGCTGGCCGTCCTGGAGCAGCGCGGCAG
GATCACGGCCCTCGGCAAGCGGGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCCGCAGCGGACCTCG
CCATCGCCCTCGCCCTGGCCAGCGCGGCGAGCGACACCCCGCTGCCGAAGAACCTCGTGGCGATCGGTGAAGTGGGCCTG
GCGGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGACTGGCCGAGGCGCACCGCCTGGGCTTCACCCACGCCCTCGT
GCCGACCGATCCCGGCAGGATCCCGGCCGGTATGAAGGTCATCGAAGTCGCCGACATGGGTGAGGCGCTGCGCGTCCTTC
CGCGATCCCGTCGTCGAGAGGCCCCACGGGAGGAGGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.248

96.375

0.426
  radA Streptococcus mitis SK321

43.363

96.375

0.418
  radA Streptococcus mitis NCTC 12261

43.363

96.375

0.418
  radA Streptococcus pneumoniae Rx1

43.43

95.736

0.416
  radA Streptococcus pneumoniae TIGR4

43.43

95.736

0.416
  radA Streptococcus pneumoniae D39

43.43

95.736

0.416
  radA Streptococcus pneumoniae R6

43.43

95.736

0.416