Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DMA15_RS19655 Genome accession   NZ_CP029617
Coordinates   4353592..4354191 (+) Length   199 a.a.
NCBI ID   WP_125514107.1    Uniprot ID   A0ABS6YSR7
Organism   Streptomyces sp. WAC 01529     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4348592..4359191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS19635 (DMA15_19620) - 4348772..4351279 (+) 2508 WP_125514104.1 dolichyl-phosphate beta-glucosyltransferase -
  DMA15_RS19640 (DMA15_19625) - 4351402..4352052 (+) 651 WP_125514105.1 hypothetical protein -
  DMA15_RS19645 (DMA15_19630) - 4352132..4352884 (-) 753 WP_240659857.1 SLATT domain-containing protein -
  DMA15_RS19650 (DMA15_19635) - 4353163..4353504 (+) 342 WP_125514106.1 YbaB/EbfC family nucleoid-associated protein -
  DMA15_RS19655 (DMA15_19640) recR 4353592..4354191 (+) 600 WP_125514107.1 recombination mediator RecR Machinery gene
  DMA15_RS19660 (DMA15_19645) - 4354184..4354852 (+) 669 WP_125514108.1 DUF5063 domain-containing protein -
  DMA15_RS19665 (DMA15_19650) - 4355071..4356351 (+) 1281 WP_125514109.1 aspartate kinase -
  DMA15_RS19670 (DMA15_19655) - 4356348..4357406 (+) 1059 WP_125514110.1 aspartate-semialdehyde dehydrogenase -
  DMA15_RS19675 (DMA15_19660) - 4357776..4358438 (+) 663 WP_125514111.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21859.22 Da        Isoelectric Point: 4.9976

>NTDB_id=255046 DMA15_RS19655 WP_125514107.1 4353592..4354191(+) (recR) [Streptomyces sp. WAC 01529]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQTEPTDVRRLAHALLEVKDKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=255046 DMA15_RS19655 WP_125514107.1 4353592..4354191(+) (recR) [Streptomyces sp. WAC 01529]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGACGGAGCCCACGGACGTTCGCCGGCTCGCGCACGCCCTCCTTGAGGTGAAGGACAAGGTCC
GCTTCTGCGCGACCTGTGGGAACGTCGCCCAGGAAGAGCTGTGCAACATCTGCCGCGACCCGCGCCGCGACCTCTCGGTC
ATCTGTGTGGTCGAGGAGCCGAAGGATGTCGTGGCGATCGAGCGGACCCGCGAGTTCCGCGGGAAGTACCACGTCCTCGG
CGGGGCGATCAGCCCGATCGAGGGCGTGGGCCCGGACGATCTGCGGATACGAGAACTCCTGGCGAGGCTCGCGGACGGCA
CCGTCACGGAGCTGATCCTGGCGACCGATCCCAACCTGGAGGGCGAGGCGACGGCGACGTACCTCGCACGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGACTCCCTGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACCCT
GGGCCGCGCTTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

RecR protein (RecR_ZnF)

(38-77)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462