Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DMA15_RS19530 Genome accession   NZ_CP029617
Coordinates   4327416..4328084 (+) Length   222 a.a.
NCBI ID   WP_125514084.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01529     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4322416..4333084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS19510 (DMA15_19495) - 4322780..4324009 (+) 1230 WP_125514083.1 acyltransferase -
  DMA15_RS19515 (DMA15_19500) - 4324059..4325324 (+) 1266 WP_240659856.1 sensor histidine kinase -
  DMA15_RS19520 (DMA15_19505) - 4325321..4325998 (+) 678 WP_276314356.1 response regulator transcription factor -
  DMA15_RS19525 (DMA15_19510) - 4326154..4327419 (+) 1266 WP_125517882.1 histidine kinase -
  DMA15_RS19530 (DMA15_19515) vraR 4327416..4328084 (+) 669 WP_125514084.1 response regulator transcription factor Regulator
  DMA15_RS19535 (DMA15_19520) - 4328217..4329434 (+) 1218 WP_125514085.1 cytochrome P450 -
  DMA15_RS19540 (DMA15_19525) - 4329465..4331090 (-) 1626 WP_125514086.1 ABC transporter permease -
  DMA15_RS19545 (DMA15_19530) - 4331087..4332004 (-) 918 WP_125514087.1 ABC transporter ATP-binding protein -
  DMA15_RS19550 (DMA15_19535) - 4332106..4332663 (+) 558 WP_206302773.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24149.87 Da        Isoelectric Point: 4.7628

>NTDB_id=255044 DMA15_RS19530 WP_125514084.1 4327416..4328084(+) (vraR) [Streptomyces sp. WAC 01529]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAIERVRDLAPDVVLMDIRMPELNGIEATREIIASEGTSKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVASGEALLAPTVTRRLITEFSKLAETPRLSAAARAQQYGELT
ERETEVLVLIAQGLSNAEIASRLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 669 bp        

>NTDB_id=255044 DMA15_RS19530 WP_125514084.1 4327416..4328084(+) (vraR) [Streptomyces sp. WAC 01529]
ATGACGATCCGCGTCCTGATCGCGGACGACCAGATGATGGTCCGCGAGGGGTTCTCCGTCCTCCTCAACGCCATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTGAACGGCCGCGAGGCGATCGAACGCGTCCGCGACCTCGCCCCCGACGTCGTCCTGA
TGGACATCCGCATGCCCGAGCTGAACGGCATCGAGGCGACCCGCGAGATCATCGCGTCCGAGGGCACGTCCAAGGTGCTC
GTCCTGACCACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGGGCGGGCGCCTCCGGCTTCCTCCTCAAGGACGC
CTCGGCCCGCCAACTCGCGGAAGGCGTAAGGGTGGTGGCGTCCGGCGAGGCACTCCTGGCCCCCACGGTGACGCGCCGCC
TGATCACGGAGTTCTCCAAGCTGGCGGAGACCCCGCGCCTCTCGGCGGCGGCCCGGGCCCAGCAGTACGGCGAACTCACC
GAGCGCGAGACGGAGGTCTTGGTCCTCATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCTCGCGCCTGGTGGTGGCCGA
GTCCACGATCAAGACGCACGTCAGCAGGGTCCTGGTAAAACTGGGCCTACGCGACCGTACGCAGGCTGCGGTATTCGCCT
ACGAGGCGAGATTGGTGACGCCGGGTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.292

98.649

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

43.578

98.198

0.428