Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DMA15_RS07620 Genome accession   NZ_CP029617
Coordinates   1692216..1692878 (-) Length   220 a.a.
NCBI ID   WP_240659706.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01529     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687216..1697878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMA15_RS07585 (DMA15_07570) - 1687500..1688006 (+) 507 WP_125511885.1 HNH endonuclease -
  DMA15_RS07590 (DMA15_07575) - 1688088..1689020 (-) 933 WP_125511886.1 SPFH domain-containing protein -
  DMA15_RS07595 (DMA15_07580) - 1689138..1689566 (-) 429 WP_125511887.1 NfeD family protein -
  DMA15_RS07600 (DMA15_07585) - 1689634..1690431 (-) 798 WP_125511888.1 ABC transporter ATP-binding protein -
  DMA15_RS07605 (DMA15_07590) - 1690553..1691335 (+) 783 WP_125511889.1 hypothetical protein -
  DMA15_RS07610 (DMA15_07595) - 1691413..1691661 (-) 249 WP_125511890.1 chaplin -
  DMA15_RS07615 (DMA15_07600) - 1691831..1692076 (-) 246 WP_125511891.1 chaplin -
  DMA15_RS07620 (DMA15_07605) vraR 1692216..1692878 (-) 663 WP_240659706.1 response regulator transcription factor Regulator
  DMA15_RS07625 (DMA15_07610) - 1692871..1694016 (-) 1146 WP_125511892.1 GAF domain-containing sensor histidine kinase -
  DMA15_RS07630 (DMA15_07615) - 1694443..1695135 (+) 693 WP_125511893.1 transglycosylase SLT domain-containing protein -
  DMA15_RS07635 (DMA15_07620) - 1695244..1697853 (-) 2610 WP_125511894.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 23561.01 Da        Isoelectric Point: 5.6437

>NTDB_id=255022 DMA15_RS07620 WP_240659706.1 1692216..1692878(-) (vraR) [Streptomyces sp. WAC 01529]
MADAVLNAKTGIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGAEGVALAEELRPDVVLMDVKMPGMDGVEALRKLR
ELANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAGALLSQEEAHGGQGRGGSLT
EREREVLGLIADGRSNREIARALVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGMAG

Nucleotide


Download         Length: 663 bp        

>NTDB_id=255022 DMA15_RS07620 WP_240659706.1 1692216..1692878(-) (vraR) [Streptomyces sp. WAC 01529]
GTGGCTGACGCCGTGCTCAACGCGAAGACCGGGATCCGGGTGCTGCTGGTCGACGACCACCAGGTGGTCCGCCGCGGCCT
GCGGACGTTCCTGGAGGTACAGGACGACATCGAGGTCGTCGGCGAGGCCTCCGACGGCGCCGAAGGAGTCGCGCTCGCCG
AGGAGCTGCGGCCGGACGTCGTCCTGATGGACGTCAAGATGCCCGGCATGGACGGCGTCGAGGCGCTGCGCAAGCTCCGC
GAGCTGGCCAACCCCGCGCGCGTGCTCATCGTCACCAGCTTCACCGAGCAGCGCACGGTCGTCCCGGCCCTGCGCGCGGG
CGCCGCGGGGTACGTCTACAAGGACATCGACCCGGACGCCCTCGCCGGTGCCATCCGCTCGGTGCACGCGGGACACGTCC
TGCTCCAGCCCGAGGTGGCGGGCGCGCTCCTCTCCCAGGAGGAGGCCCACGGCGGCCAGGGCAGAGGCGGCTCGCTGACC
GAGCGCGAGCGGGAGGTCCTCGGCCTCATCGCCGACGGCCGTTCCAACCGCGAGATCGCCCGCGCCCTCGTCCTCTCCGA
GAAGACCGTCAAGACACACGTCTCGAACATCCTGATGAAACTGGACCTGGCCGACCGCACCCAGGCCGCGCTCTGGGCCG
TACGCCACGGCATGGCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(14-125)

Bacterial regulatory proteins, luxR family (GerE)

(158-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.411

94.091

0.427
  degU Bacillus subtilis subsp. subtilis str. 168

39.013

100

0.395