Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DL538_RS17785 Genome accession   NZ_CP029609
Coordinates   3379611..3380246 (-) Length   211 a.a.
NCBI ID   WP_029318425.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3374611..3385246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS17765 (DL538_17660) yvzF 3375668..3375853 (-) 186 WP_003244599.1 YvzF family protein -
  DL538_RS17770 (DL538_17665) gerAA 3375971..3377419 (+) 1449 WP_033884692.1 spore germination receptor protein GerAA -
  DL538_RS17775 (DL538_17670) gerAB 3377388..3378485 (+) 1098 WP_014480828.1 spore germination receptor protein GerAB -
  DL538_RS17780 (DL538_17675) gerAC 3378482..3379603 (+) 1122 WP_131228079.1 spore germination receptor protein GerAC -
  DL538_RS17785 (DL538_17680) vraR 3379611..3380246 (-) 636 WP_029318425.1 two-component system response regulator LiaR Regulator
  DL538_RS17790 (DL538_17685) liaS 3380224..3381306 (-) 1083 WP_131228081.1 two-component system sensor histidine kinase LiaS -
  DL538_RS17795 (DL538_17690) liaF 3381303..3382028 (-) 726 WP_131228083.1 LiaRS two-component regulatory system accessory protein LiaF -
  DL538_RS17800 (DL538_17695) liaG 3382062..3382934 (-) 873 WP_131228085.1 DUF4097 domain-containing protein -
  DL538_RS17805 (DL538_17700) liaH 3383035..3383712 (-) 678 WP_003228506.1 stress responsive protein LiaH -
  DL538_RS17810 (DL538_17705) liaI 3383739..3384119 (-) 381 WP_014480835.1 cell envelope stress-induced membrane anchor protein LiaI -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23123.77 Da        Isoelectric Point: 5.0163

>NTDB_id=254985 DL538_RS17785 WP_029318425.1 3379611..3380246(-) (vraR) [Bacillus subtilis subsp. subtilis strain G7]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAVELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENALPHESLTKRELEILCL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=254985 DL538_RS17785 WP_029318425.1 3379611..3380246(-) (vraR) [Bacillus subtilis subsp. subtilis strain G7]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTAGCTGTGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACAAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTAGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGCGCTCCCGCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTGCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACAGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

38.117

100

0.403