Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   DL538_RS09490 Genome accession   NZ_CP029609
Coordinates   1820241..1820672 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1815241..1825672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS09470 (DL538_09450) spoVS 1815802..1816062 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  DL538_RS09475 (DL538_09455) tdh 1816328..1817371 (+) 1044 WP_106073924.1 L-threonine 3-dehydrogenase -
  DL538_RS09480 (DL538_09460) kbl 1817384..1818562 (+) 1179 WP_106073925.1 glycine C-acetyltransferase -
  DL538_RS09485 (DL538_09465) miaB 1818710..1820239 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  DL538_RS09490 (DL538_09470) ymcA 1820241..1820672 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  DL538_RS09495 (DL538_09475) cotE 1820926..1821471 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  DL538_RS09500 (DL538_09480) hexA 1821604..1824180 (+) 2577 WP_003231832.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=254933 DL538_RS09490 WP_003231834.1 1820241..1820672(+) (ymcA) [Bacillus subtilis subsp. subtilis strain G7]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=254933 DL538_RS09490 WP_003231834.1 1820241..1820672(+) (ymcA) [Bacillus subtilis subsp. subtilis strain G7]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1