Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DL538_RS05485 Genome accession   NZ_CP029609
Coordinates   1027001..1027648 (+) Length   215 a.a.
NCBI ID   WP_015252479.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain G7     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1022001..1032648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DL538_RS05470 (DL538_05460) glpD 1022174..1023841 (+) 1668 WP_131227258.1 glycerol-3-phosphate dehydrogenase -
  DL538_RS05475 (DL538_05465) pgcA 1023971..1025716 (+) 1746 WP_021479677.1 phosphoglucomutase -
  DL538_RS05480 (DL538_05470) yhcY 1025865..1027004 (+) 1140 WP_131227259.1 two-component system sensor histidine kinase YhcY -
  DL538_RS05485 (DL538_05475) vraR 1027001..1027648 (+) 648 WP_015252479.1 two-component system response regulator YhcZ Regulator
  DL538_RS05490 (DL538_05480) yhdA 1027645..1028169 (+) 525 WP_131227260.1 FMN-dependent NADPH-azoreductase -
  DL538_RS05495 (DL538_05485) yhdB 1028184..1028426 (-) 243 WP_003233373.1 YhdB family protein -
  DL538_RS05500 (DL538_05490) yhdC 1028627..1028950 (+) 324 WP_014476269.1 YqzG/YhdC family protein -
  DL538_RS05505 (DL538_05495) lytF 1028992..1030458 (-) 1467 WP_122895221.1 peptidoglycan endopeptidase LytF -
  DL538_RS05510 (DL538_05500) nsrR 1030611..1031051 (-) 441 WP_014479293.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24149.78 Da        Isoelectric Point: 6.3034

>NTDB_id=254891 DL538_RS05485 WP_015252479.1 1027001..1027648(+) (vraR) [Bacillus subtilis subsp. subtilis strain G7]
MKIVIADDHHVVRKGLRFFFATQDDIEVVGEAATGLEALRVIEETKPDLVLMDLSMPEMDGIQAIKKAIQQFPDTNIIVL
TSYSDQEHVIPALQAGAKAYQLKDTEPEELVKTLRQVHAGEYKLSTAIMPHVLTHMKNQHDPEKEKYYQLTRREKDVLTE
IANGKSNKEIAAALFISEKTVKTHVSNLLAKLEVADRTQAALFAVKYNLNGEISK

Nucleotide


Download         Length: 648 bp        

>NTDB_id=254891 DL538_RS05485 WP_015252479.1 1027001..1027648(+) (vraR) [Bacillus subtilis subsp. subtilis strain G7]
ATGAAAATTGTCATTGCTGATGATCATCATGTTGTCAGAAAGGGTCTGCGTTTTTTCTTTGCCACCCAGGATGATATTGA
AGTCGTCGGAGAAGCTGCAACTGGATTAGAAGCTCTCCGTGTCATCGAAGAGACAAAGCCGGATCTTGTGCTAATGGATC
TGTCTATGCCCGAGATGGACGGCATTCAAGCCATTAAAAAAGCAATACAGCAATTTCCGGATACGAATATCATTGTGCTG
ACGAGCTACTCTGATCAGGAGCACGTCATCCCCGCGCTTCAGGCAGGCGCGAAGGCGTATCAATTAAAGGATACGGAGCC
CGAGGAATTGGTGAAAACACTAAGACAAGTGCATGCTGGCGAATACAAGCTTTCTACAGCTATTATGCCCCATGTGCTGA
CACATATGAAAAATCAGCACGACCCGGAAAAAGAAAAATACTATCAATTAACAAGAAGGGAAAAAGACGTTCTGACTGAA
ATAGCAAACGGGAAAAGCAATAAAGAAATCGCAGCAGCCTTGTTTATTTCAGAAAAAACAGTAAAAACCCATGTATCGAA
TCTTTTAGCAAAACTTGAAGTGGCCGACCGCACGCAAGCAGCGCTTTTCGCAGTGAAATATAATCTGAATGGAGAGATCT
CGAAATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(3-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.976

97.209

0.437
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.395