Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DLM49_RS31765 Genome accession   NZ_CP029601
Coordinates   7088691..7089356 (-) Length   221 a.a.
NCBI ID   WP_125508573.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01438     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7083691..7094356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM49_RS31740 (DLM49_31795) - 7084358..7085188 (-) 831 WP_125508566.1 alpha/beta fold hydrolase -
  DLM49_RS31745 (DLM49_31800) - 7085333..7086214 (+) 882 WP_125508567.1 RNA polymerase sigma-70 factor -
  DLM49_RS31750 (DLM49_31805) - 7086385..7087146 (+) 762 WP_125508569.1 GntR family transcriptional regulator -
  DLM49_RS31755 (DLM49_31810) - 7087219..7087332 (+) 114 Protein_6234 phosphoglycerate mutase -
  DLM49_RS31760 (DLM49_31815) - 7087425..7088582 (-) 1158 WP_125508571.1 ROK family transcriptional regulator -
  DLM49_RS31765 (DLM49_31820) vraR 7088691..7089356 (-) 666 WP_125508573.1 response regulator transcription factor Regulator
  DLM49_RS31770 (DLM49_31825) - 7089371..7090540 (-) 1170 WP_125508575.1 histidine kinase -
  DLM49_RS31775 (DLM49_31830) - 7090648..7091568 (+) 921 WP_125508577.1 ATP-binding cassette domain-containing protein -
  DLM49_RS31780 (DLM49_31835) - 7091572..7092297 (+) 726 WP_125508579.1 ABC transporter permease -
  DLM49_RS31785 (DLM49_31840) - 7092353..7092790 (+) 438 WP_125508581.1 hypothetical protein -
  DLM49_RS31790 (DLM49_31845) mug 7092801..7093301 (-) 501 WP_125510482.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23510.21 Da        Isoelectric Point: 5.8813

>NTDB_id=254752 DLM49_RS31765 WP_125508573.1 7088691..7089356(-) (vraR) [Streptomyces sp. WAC 01438]
MAVTVLLVDDEPLVRAGLRAVLEAQPDIAVAGEAADGAAVIPLVRQLRPDVVAMDVRMPLMNGIEATRALLRTVEAPPKI
LVVTTFENDEYVYGALRAGADGFLLKRARPAEIVHAVRLVAEGESLLFPASVRRLAAEYGDDGGGNRAARAVLERARLTE
REGEVLRLMARGLTNAEIAARLVVGTETVKSHVSAVLTKLGVRDRTQAVIAAYESGFVAPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=254752 DLM49_RS31765 WP_125508573.1 7088691..7089356(-) (vraR) [Streptomyces sp. WAC 01438]
ATGGCGGTCACCGTTCTGCTCGTCGACGACGAGCCCCTGGTACGCGCCGGTCTGCGGGCCGTGCTGGAGGCGCAGCCCGA
CATCGCGGTGGCCGGGGAGGCCGCCGACGGTGCGGCGGTGATTCCGCTGGTGCGGCAGTTGCGGCCGGACGTGGTCGCCA
TGGACGTACGCATGCCGCTGATGAACGGGATCGAGGCCACGCGCGCGCTGCTGCGGACGGTCGAGGCGCCGCCGAAGATC
CTGGTGGTGACGACGTTCGAGAACGACGAGTACGTGTACGGGGCGCTGCGCGCGGGGGCCGACGGGTTCCTGCTGAAGCG
GGCCCGGCCGGCGGAGATCGTGCACGCCGTGCGGCTGGTCGCCGAGGGCGAGTCGCTGCTGTTCCCCGCCTCGGTGCGGC
GCCTCGCGGCCGAGTACGGCGACGACGGCGGCGGCAACCGCGCCGCGCGGGCGGTGCTGGAACGGGCGCGGCTGACGGAG
CGCGAGGGGGAGGTGCTGCGCCTGATGGCGCGGGGCCTGACCAACGCGGAGATCGCCGCCCGGCTGGTGGTGGGGACGGA
GACCGTGAAGTCGCATGTGAGCGCCGTACTGACCAAGCTCGGGGTGCGCGACCGCACCCAGGCGGTGATCGCCGCCTACG
AGTCGGGGTTCGTGGCGCCGGGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-211)

Response regulator receiver domain (Response_reg)

(5-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.45

98.643

0.389
  degU Bacillus subtilis subsp. subtilis str. 168

37.611

100

0.385

Multiple sequence alignment