Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DLM49_RS16820 Genome accession   NZ_CP029601
Coordinates   3795903..3796502 (-) Length   199 a.a.
NCBI ID   WP_125505128.1    Uniprot ID   -
Organism   Streptomyces sp. WAC 01438     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3790903..3801502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLM49_RS16800 (DLM49_16845) - 3791606..3792181 (-) 576 WP_125505124.1 SigE family RNA polymerase sigma factor -
  DLM49_RS16805 (DLM49_16850) - 3792676..3793749 (-) 1074 WP_125505125.1 aspartate-semialdehyde dehydrogenase -
  DLM49_RS16810 (DLM49_16855) - 3793749..3795026 (-) 1278 WP_125505126.1 aspartate kinase -
  DLM49_RS16815 (DLM49_16860) - 3795251..3795910 (-) 660 WP_125505127.1 DUF5063 domain-containing protein -
  DLM49_RS16820 (DLM49_16865) recR 3795903..3796502 (-) 600 WP_125505128.1 recombination mediator RecR Machinery gene
  DLM49_RS16825 (DLM49_16870) - 3796571..3796912 (-) 342 WP_125505129.1 YbaB/EbfC family nucleoid-associated protein -
  DLM49_RS16830 (DLM49_16875) - 3797230..3797976 (+) 747 WP_125505130.1 SLATT domain-containing protein -
  DLM49_RS16835 (DLM49_16880) - 3797992..3800439 (-) 2448 WP_125505131.1 serine/threonine-protein kinase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21733.05 Da        Isoelectric Point: 5.1558

>NTDB_id=254717 DLM49_RS16820 WP_125505128.1 3795903..3796502(-) (recR) [Streptomyces sp. WAC 01438]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHVLQAEPTDVRRLAHALMEVKAKVRFCATCGNVAQEEQCGICRDTRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIDGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=254717 DLM49_RS16820 WP_125505128.1 3795903..3796502(-) (recR) [Streptomyces sp. WAC 01438]
TTGTACGAAGGCGTGGTCCAGGACCTCATCGACGAACTCGGGCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACGTCCTTCAGGCGGAACCGACGGACGTGCGGCGCCTGGCGCACGCGCTGATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACCTGCGGCAACGTCGCGCAGGAGGAGCAGTGCGGCATCTGCCGCGACACCCGCCGCGACCCGGCCGTC
ATCTGCGTCGTGGAGGAACCGAAGGACGTCGTGGCCATCGAGCGCACGCGTGAGTTCCGCGGCCGCTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGACGGGGTGGGCCCGGACGACTTGCGGATCAGGGAACTGCTGGCCCGGCTGGCCGACGGCA
CGGTCACCGAGCTCATTCTGGCCACGGACCCGAATCTCGAAGGCGAGGCCACGGCGACGTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGCGGCGACCTGGAATACGCGGACGAGGTGACCCT
CGGTCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

56.633

98.492

0.558
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452