Detailed information    

insolico Bioinformatically predicted

Overview

Name   irvR   Type   Regulator
Locus tag   SAOUHSC_01575 Genome accession   NC_007795
Coordinates   1503978..1504691 (+) Length   237 a.a.
NCBI ID   YP_500091.1    Uniprot ID   Q2FY89
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498978..1509691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_01565 - 1499730..1500287 (-) 558 YP_500080.1 hypothetical protein -
  SAOUHSC_01566 - 1500313..1501479 (-) 1167 YP_500081.1 phi APSE P51-like protein -
  SAOUHSC_01567 - 1501476..1501838 (-) 363 YP_500082.1 hypothetical protein -
  SAOUHSC_01568 - 1501853..1502176 (-) 324 YP_500083.1 hypothetical protein -
  SAOUHSC_01569 - 1502255..1502416 (-) 162 YP_500084.1 hypothetical protein -
  SAOUHSC_01570 - 1502429..1502692 (-) 264 YP_500085.1 PVL orf 37-like protein -
  SAOUHSC_01571 - 1502717..1502932 (-) 216 YP_500086.1 SLT orf 71-like protein -
  SAOUHSC_01572 - 1502987..1503352 (+) 366 YP_500087.1 hypothetical protein -
  SAOUHSC_01573 - 1503321..1503566 (-) 246 YP_500088.1 hypothetical protein -
  SAOUHSC_01574 - 1503582..1503845 (-) 264 YP_500089.1 helix-turn-helix domain-containing protein -
  SAOUHSC_A01514 - 1503842..1504015 (-) 174 YP_500090.1 hypothetical protein -
  SAOUHSC_01575 irvR 1503978..1504691 (+) 714 YP_500091.1 helix-turn-helix domain-containing protein Regulator
  SAOUHSC_01576 - 1504707..1505639 (+) 933 YP_500092.1 exonuclease family protein -
  SAOUHSC_01577 - 1505645..1505986 (+) 342 YP_500093.1 hypothetical protein -
  SAOUHSC_01578 - 1506145..1506372 (+) 228 YP_500094.1 hypothetical protein -
  SAOUHSC_01579 - 1506409..1506555 (+) 147 YP_500095.1 hypothetical protein -
  SAOUHSC_01580 - 1506552..1507166 (-) 615 YP_500096.1 phi PVL ORF 30-like protein -
  SAOUHSC_01582 - 1507292..1508497 (+) 1206 YP_500097.1 bacteriophage integrase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27017.58 Da        Isoelectric Point: 5.0545

>NTDB_id=25469 SAOUHSC_01575 YP_500091.1 1503978..1504691(+) (irvR) [Staphylococcus aureus subsp. aureus NCTC 8325]
MNKERNIIIAKNIRKFLNDSNMSQKKLAELINIKPSTLSDYLNLRSNPSHGVIQRIADVFEVGKSDIDTTYKDDNDITSI
YNKLTPPRQENVLNYANEQLEEQNSKGDNVVDINSYKQEKTPVNVNGCVSAGVGERLHDETLFTEMVKGPIPTHDLALKV
NGDSMEPMFKDGEIIFVEKTHNIKNGQIGIFIIEEEAYVKKVFVEDDRLTLVSLNKDYDDLHFYRNESVRLIGKVIL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=25469 SAOUHSC_01575 YP_500091.1 1503978..1504691(+) (irvR) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGAACAAAGAAAGAAATATTATTATAGCCAAAAACATTAGAAAATTTCTCAACGATTCAAATATGTCTCAAAAGAAACT
TGCTGAACTCATTAACATAAAACCATCTACTTTAAGCGATTATTTAAATTTACGTTCCAACCCCTCTCACGGCGTTATAC
AAAGGATAGCTGATGTTTTCGAGGTTGGTAAAAGCGACATAGATACTACATACAAAGACGATAACGACATCACTTCCATA
TACAACAAACTCACACCTCCCCGCCAAGAAAACGTACTTAACTATGCAAATGAACAATTGGAAGAACAGAATTCTAAAGG
AGATAACGTTGTAGATATTAATTCATATAAACAGGAGAAAACTCCAGTTAACGTCAATGGTTGCGTCTCTGCTGGTGTAG
GAGAACGTTTACACGATGAAACGCTATTTACTGAAATGGTTAAAGGACCTATCCCCACACACGATTTAGCGTTAAAAGTA
AATGGTGATTCTATGGAACCTATGTTTAAAGATGGCGAAATCATATTTGTGGAGAAAACTCACAATATAAAGAATGGACA
AATTGGTATATTCATCATTGAAGAAGAAGCGTACGTTAAGAAAGTCTTTGTTGAAGATGATAGATTGACTCTAGTTTCAC
TAAATAAAGATTACGACGATCTACACTTTTATAGAAATGAAAGTGTGAGGTTAATTGGAAAAGTTATTTTATAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(127-236)

Helix-turn-helix (HTH_3)

(13-63)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FY89

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  irvR Streptococcus mutans UA159

33.929

100

0.401

Multiple sequence alignment