Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CT113_RS08850 Genome accession   NZ_CP024635
Coordinates   1752333..1752899 (-) Length   188 a.a.
NCBI ID   WP_011666823.1    Uniprot ID   M5ABA8
Organism   Levilactobacillus brevis strain BDGP6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1747333..1757899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CT113_RS08830 (CT113_08830) - 1747714..1748490 (-) 777 WP_024526038.1 hypothetical protein -
  CT113_RS08835 (CT113_08835) - 1749098..1750705 (+) 1608 WP_024526039.1 peptide ABC transporter substrate-binding protein -
  CT113_RS08840 (CT113_08840) - 1750736..1751923 (+) 1188 WP_024526040.1 amidohydrolase family protein -
  CT113_RS08845 (CT113_08845) rpsR 1752068..1752304 (-) 237 WP_011666824.1 30S ribosomal protein S18 -
  CT113_RS08850 (CT113_08850) ssb 1752333..1752899 (-) 567 WP_011666823.1 single-stranded DNA-binding protein Machinery gene
  CT113_RS08855 (CT113_08855) rpsF 1752933..1753229 (-) 297 WP_011666822.1 30S ribosomal protein S6 -
  CT113_RS08860 (CT113_08860) gyrA 1753889..1756423 (-) 2535 WP_024526041.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20513.13 Da        Isoelectric Point: 4.7381

>NTDB_id=254649 CT113_RS08850 WP_011666823.1 1752333..1752899(-) (ssb) [Levilactobacillus brevis strain BDGP6]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNQQGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVENFSFLEPRSRNENNGGGNYNGGSMNNNAPQNQNQNANPYTSGNPAPAAPSQGMAPNSGSNNQ
NSNANNNAADPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=254649 CT113_RS08850 WP_011666823.1 1752333..1752899(-) (ssb) [Levilactobacillus brevis strain BDGP6]
ATGATCAACCGAGTAGTACTTACTGGCCGACTAACACGGGATGTTGACTTACGCTACACCCAAGGCGGTGCTGCTGTAGC
CACCTTCACGCTGGCCGTTGATCGGCGGTTCACCAACCAACAAGGTGAACGAGAAGCTGATTTCGTAAGTTGCGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCCAACTTCTTCCACAAGGGTTCCCTTGTCGGTATTGAAGGACGCATCCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTACGTCACCGAAGTGGTTGTCGAGAACTTTTCGTTCTTGGAACCCCGTTC
TCGTAACGAGAACAACGGTGGTGGAAACTACAATGGCGGCTCCATGAATAATAATGCTCCTCAAAATCAGAATCAAAATG
CCAATCCATACACGAGTGGGAATCCAGCTCCGGCTGCGCCTTCTCAAGGTATGGCCCCGAATTCTGGAAGTAACAATCAG
AACAGTAATGCGAACAACAATGCAGCTGATCCGTTTGCCAATTCTGGCGATTCCATTGACATTTCCGATGATGATTTACC
GTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M5ABA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.702

100

0.617
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.574

Multiple sequence alignment