Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   SAOUHSC_02334 Genome accession   NC_007795
Coordinates   2163706..2164101 (-) Length   131 a.a.
NCBI ID   YP_500813.1    Uniprot ID   Q2FWF7
Organism   Staphylococcus aureus subsp. aureus NCTC 8325     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2158706..2169101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAOUHSC_02328 thiE 2159306..2159947 (-) 642 YP_500807.1 thiamine-phosphate pyrophosphorylase -
  SAOUHSC_02329 - 2159949..2160740 (-) 792 YP_500808.1 hydroxyethylthiazole kinase -
  SAOUHSC_02330 - 2160724..2161554 (-) 831 YP_500809.1 phosphomethylpyrimidine kinase -
  SAOUHSC_02331 - 2161547..2162236 (-) 690 YP_500810.1 hypothetical protein -
  SAOUHSC_02332 - 2162336..2162467 (-) 132 YP_500811.1 hypothetical protein -
  SAOUHSC_02333 - 2162622..2163317 (-) 696 YP_500812.1 transglycosylase SceD -
  SAOUHSC_02334 ssb 2163706..2164101 (-) 396 YP_500813.1 bacteriophage L54a single-stranded DNA binding protein Machinery gene
  SAOUHSC_02335 - 2164232..2164735 (+) 504 YP_500814.1 hypothetical protein -
  SAOUHSC_02336 fabZ 2164794..2165234 (-) 441 YP_500815.1 (3R)-hydroxymyristoyl-ACP dehydratase -
  SAOUHSC_02337 - 2165268..2166533 (-) 1266 YP_500816.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SAOUHSC_02338 - 2166644..2166877 (-) 234 YP_500817.1 hypothetical protein -
  SAOUHSC_02339 - 2167009..2167101 (-) 93 YP_500818.1 hypothetical protein -
  SAOUHSC_02340 atpC 2167439..2167843 (-) 405 YP_500819.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=25460 SAOUHSC_02334 YP_500813.1 2163706..2164101(-) (ssb) [Staphylococcus aureus subsp. aureus NCTC 8325]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=25460 SAOUHSC_02334 YP_500813.1 2163706..2164101(-) (ssb) [Staphylococcus aureus subsp. aureus NCTC 8325]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2FWF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment