Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   CS557_RS07390 Genome accession   NZ_CP024632
Coordinates   1546480..1546953 (+) Length   157 a.a.
NCBI ID   WP_228150905.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1541480..1551953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS07360 (CS557_07370) kdsB 1542142..1542903 (+) 762 WP_099948591.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CS557_RS07365 (CS557_07375) - 1542905..1543891 (+) 987 WP_099948592.1 DNA polymerase III subunit delta' -
  CS557_RS07370 (CS557_07380) - 1544118..1544462 (+) 345 WP_004954079.1 PilZ domain-containing protein -
  CS557_RS07375 (CS557_07385) - 1544485..1545258 (+) 774 WP_004911519.1 TatD family hydrolase -
  CS557_RS07380 (CS557_07390) - 1545297..1545905 (+) 609 WP_020899852.1 TetR/AcrR family transcriptional regulator -
  CS557_RS07385 (CS557_07395) - 1545918..1546466 (+) 549 WP_039047968.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  CS557_RS07390 (CS557_07400) xcpV 1546480..1546953 (+) 474 WP_228150905.1 type II secretion system minor pseudopilin GspI Machinery gene
  CS557_RS07395 (CS557_07405) xcpW 1546950..1547678 (+) 729 WP_228150900.1 type II secretion system minor pseudopilin GspJ Machinery gene
  CS557_RS07400 (CS557_07410) gspK 1547675..1548634 (+) 960 WP_099948594.1 type II secretion system minor pseudopilin GspK -
  CS557_RS07405 (CS557_07415) - 1548741..1549337 (+) 597 WP_099948595.1 6-pyruvoyl trahydropterin synthase family protein -
  CS557_RS07410 (CS557_07420) ung 1549376..1550089 (+) 714 WP_099948596.1 uracil-DNA glycosylase -
  CS557_RS07415 (CS557_07425) - 1550086..1551210 (+) 1125 WP_171053792.1 enoyl-CoA hydratase/isomerase family protein -
  CS557_RS07420 (CS557_07430) tadA 1551217..1551720 (+) 504 WP_087539688.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17553.29 Da        Isoelectric Point: 9.7314

>NTDB_id=254591 CS557_RS07390 WP_228150905.1 1546480..1546953(+) (xcpV) [Acinetobacter junii strain lzh-X15]
MTNRQFSLLDKKSDSLNFQTIAEVKLDSLKIQKGFTLLEVMVALAIFAVAAIALTKIAMQYTQSTSNAILRTKAQFVAMN
EIATMEINQEWLEGTQSKQVTAQGETWQIDKKAQSTLSPKIQRIELQVSLYNTEQGKVEAGITNLVFFNYPAKVKTS

Nucleotide


Download         Length: 474 bp        

>NTDB_id=254591 CS557_RS07390 WP_228150905.1 1546480..1546953(+) (xcpV) [Acinetobacter junii strain lzh-X15]
ATGACTAATCGACAATTCAGTTTGCTTGATAAAAAATCAGATAGTCTTAATTTTCAGACAATTGCTGAGGTTAAACTAGA
TTCTCTCAAAATACAGAAAGGTTTTACGCTGTTAGAGGTGATGGTTGCTTTAGCTATTTTTGCGGTCGCTGCAATCGCGT
TAACTAAAATAGCTATGCAGTATACCCAATCAACTTCAAATGCAATTTTGCGTACTAAAGCCCAATTTGTGGCAATGAAT
GAAATTGCAACCATGGAAATAAATCAAGAGTGGCTTGAAGGAACACAATCTAAACAAGTGACTGCGCAGGGAGAAACTTG
GCAAATTGATAAAAAAGCACAATCAACATTAAGCCCAAAAATTCAACGCATCGAGTTACAAGTAAGTTTATATAACACTG
AACAAGGCAAAGTTGAGGCAGGAATTACCAATCTTGTATTCTTTAATTATCCTGCTAAAGTCAAAACATCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(30-54)

Type II secretion system (T2SS), protein I (T2SSI)

(71-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

82.114

78.344

0.643

Multiple sequence alignment