Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   CS557_RS02035 Genome accession   NZ_CP024632
Coordinates   432359..433018 (-) Length   219 a.a.
NCBI ID   WP_099948036.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 427359..438018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS02000 (CS557_02005) - 427469..428143 (+) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -
  CS557_RS02005 (CS557_02010) - 428163..428795 (+) 633 WP_004909421.1 phospholipid-binding protein MlaC -
  CS557_RS02010 (CS557_02015) - 428807..429094 (+) 288 WP_004964385.1 lipid asymmetry maintenance protein MlaB -
  CS557_RS02015 (CS557_02020) - 429417..429866 (+) 450 WP_099948033.1 hypothetical protein -
  CS557_RS02020 (CS557_02025) - 430225..431238 (-) 1014 WP_004909415.1 magnesium and cobalt transport protein CorA -
  CS557_RS02025 (CS557_02030) - 431389..431973 (+) 585 WP_099948034.1 TIGR00730 family Rossman fold protein -
  CS557_RS02030 (CS557_02035) - 431983..432369 (+) 387 WP_099948035.1 NUDIX hydrolase -
  CS557_RS02035 (CS557_02040) comF 432359..433018 (-) 660 WP_099948036.1 ComF family protein Machinery gene
  CS557_RS02040 (CS557_02045) recG 433011..435056 (-) 2046 WP_099948037.1 ATP-dependent DNA helicase RecG -
  CS557_RS02045 (CS557_02050) - 435076..435894 (+) 819 WP_099948038.1 NAD-dependent epimerase/dehydratase family protein -
  CS557_RS02050 (CS557_02055) - 436019..436999 (+) 981 WP_099948039.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25017.25 Da        Isoelectric Point: 8.8068

>NTDB_id=254581 CS557_RS02035 WP_099948036.1 432359..433018(-) (comF) [Acinetobacter junii strain lzh-X15]
MFKLLSRGAQQVADYFTACHLCDIGVRAHHGVCQSCWQQLPWLKHKIERHQQDILIACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSQVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=254581 CS557_RS02035 WP_099948036.1 432359..433018(-) (comF) [Acinetobacter junii strain lzh-X15]
ATGTTTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACATCATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTATTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTACCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGTTTAGAGCGACTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCAAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

63.636

95.434

0.607
  comF Acinetobacter baumannii D1279779

63.158

95.434

0.603

Multiple sequence alignment