Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   CS557_RS01700 Genome accession   NZ_CP024632
Coordinates   366378..366845 (+) Length   155 a.a.
NCBI ID   WP_099948003.1    Uniprot ID   -
Organism   Acinetobacter junii strain lzh-X15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 361378..371845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CS557_RS01690 (CS557_01695) - 361885..362664 (+) 780 WP_099948001.1 PilX N-terminal domain-containing pilus assembly protein -
  CS557_RS01695 (CS557_01700) - 362678..366370 (+) 3693 WP_099948002.1 hypothetical protein -
  CS557_RS01700 (CS557_01705) comE 366378..366845 (+) 468 WP_099948003.1 type IV pilin protein Machinery gene
  CS557_RS01705 (CS557_01710) - 366839..367282 (+) 444 WP_099948004.1 type IV pilin protein -
  CS557_RS01710 (CS557_01715) rpsP 367499..367756 (+) 258 WP_004964546.1 30S ribosomal protein S16 -
  CS557_RS01715 (CS557_01720) rimM 367773..368321 (+) 549 WP_004951620.1 ribosome maturation factor RimM -
  CS557_RS01720 (CS557_01725) trmD 368364..369101 (+) 738 WP_099948005.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  CS557_RS01725 (CS557_01730) rplS 369335..369706 (+) 372 WP_004660214.1 50S ribosomal protein L19 -
  CS557_RS01730 (CS557_01735) - 369768..370742 (-) 975 WP_099948006.1 lipase family alpha/beta hydrolase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16795.19 Da        Isoelectric Point: 9.6568

>NTDB_id=254580 CS557_RS01700 WP_099948003.1 366378..366845(+) (comE) [Acinetobacter junii strain lzh-X15]
MNKNDGFTLIELMVVLIIIAIIAAIAIPSYQSYARRALAAQMQQEMQRISVLLERHKARNFSYKGFDLSTQGVVAPRTYS
FDLKDAATTTTAAKGSGNGKLLSATDASGRSWVLYGITSDAQNYNFLMTSTGLRCKNKTAANVVSTGCGTGEEPW

Nucleotide


Download         Length: 468 bp        

>NTDB_id=254580 CS557_RS01700 WP_099948003.1 366378..366845(+) (comE) [Acinetobacter junii strain lzh-X15]
ATGAACAAAAATGATGGTTTCACCCTGATTGAATTGATGGTAGTTCTTATAATTATTGCGATCATAGCTGCCATCGCAAT
ACCCTCATATCAATCTTATGCTCGACGTGCGCTTGCTGCTCAAATGCAGCAAGAAATGCAACGTATCTCTGTGCTACTAG
AGCGTCATAAAGCACGTAATTTTAGTTACAAGGGCTTCGATCTATCTACTCAAGGTGTTGTTGCACCTCGAACTTATAGC
TTTGATCTAAAGGATGCTGCTACTACTACTACAGCAGCCAAAGGCTCAGGTAATGGTAAATTACTTTCAGCTACTGATGC
CTCAGGACGTTCTTGGGTTTTATATGGAATAACTTCTGATGCTCAAAACTATAACTTTCTAATGACGAGTACTGGCTTAC
GTTGTAAAAATAAAACAGCTGCGAATGTAGTCTCGACAGGATGTGGTACGGGAGAGGAGCCATGGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Acinetobacter baylyi ADP1

45.783

100

0.49
  pilY2 Acinetobacter baumannii D1279779

41.875

100

0.432

Multiple sequence alignment