Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | CTT30_RS12975 | Genome accession | NZ_CP024627 |
| Coordinates | 2772006..2772611 (+) | Length | 201 a.a. |
| NCBI ID | WP_239837806.1 | Uniprot ID | A0A9Q9CTB6 |
| Organism | Vibrio coralliilyticus strain SCSIO 43001 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2767006..2777611
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CTT30_RS12955 (CTT30_13015) | - | 2767330..2768244 (-) | 915 | WP_252036647.1 | ABC transporter ATP-binding protein | - |
| CTT30_RS12960 (CTT30_13020) | - | 2768433..2770103 (-) | 1671 | WP_239865235.1 | SulP family inorganic anion transporter | - |
| CTT30_RS12965 (CTT30_13025) | can | 2770457..2771116 (+) | 660 | WP_239837804.1 | carbonate dehydratase | - |
| CTT30_RS12970 (CTT30_13030) | hpt | 2771169..2771699 (-) | 531 | WP_239837805.1 | hypoxanthine phosphoribosyltransferase | - |
| CTT30_RS12975 (CTT30_13035) | opaR | 2772006..2772611 (+) | 606 | WP_239837806.1 | LuxR/HapR/OpaR family quorum-sensing transcriptional regulator | Regulator |
| CTT30_RS12980 (CTT30_13040) | lpdA | 2772741..2774171 (-) | 1431 | WP_239837807.1 | dihydrolipoyl dehydrogenase | - |
| CTT30_RS12985 (CTT30_13045) | aceF | 2774427..2776325 (-) | 1899 | WP_252035350.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 201 a.a. Molecular weight: 23257.44 Da Isoelectric Point: 5.3049
>NTDB_id=254522 CTT30_RS12975 WP_239837806.1 2772006..2772611(+) (opaR) [Vibrio coralliilyticus strain SCSIO 43001]
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLIVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVKAIERGEVCDEHDPA
DLATLFHGICYSLFVQANRTQDDESVNRLTQSYLDMLCIYK
MDSIAKRPRTRLSPQKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNYVVRQFSNFLS
DNIDLDIHAKENLRNLTSAMVDLIVNDCHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNMFVKAIERGEVCDEHDPA
DLATLFHGICYSLFVQANRTQDDESVNRLTQSYLDMLCIYK
Nucleotide
Download Length: 606 bp
>NTDB_id=254522 CTT30_RS12975 WP_239837806.1 2772006..2772611(+) (opaR) [Vibrio coralliilyticus strain SCSIO 43001]
ATGGATTCTATAGCTAAGAGACCGCGTACGCGTCTTTCACCACAAAAACGTAAGCAACAACTGATGGAAATCGCATTAGA
AGTGTTTGCTCGACGTGGTATTGGTCGCGGTGGTCACGCTGACATTGCAGAAATCGCCCAGGTTTCTGTAGCCACCGTGT
TTAACTACTTCCCAACCCGTGAAGATTTGGTTGATGATGTACTAAACTACGTGGTTCGTCAGTTCTCTAACTTCCTATCT
GATAATATCGACCTCGATATTCACGCGAAAGAAAACCTACGCAACCTAACTTCAGCGATGGTTGATCTGATTGTCAACGA
CTGTCACTGGTTGAAAGTTTGGTTTGAGTGGAGTGCTTCAACACGTGATGAAGTATGGCCCTTGTTCGTGACCACCAACC
GCACCAATCAACTGCTGGTTCAGAACATGTTTGTCAAAGCCATCGAGCGAGGTGAGGTGTGTGACGAACACGATCCTGCA
GATCTAGCAACACTGTTCCATGGTATTTGCTACTCATTGTTCGTACAGGCTAACCGTACTCAGGACGATGAGTCTGTGAA
TCGCCTGACACAAAGCTACCTAGATATGCTTTGCATCTACAAGTAA
ATGGATTCTATAGCTAAGAGACCGCGTACGCGTCTTTCACCACAAAAACGTAAGCAACAACTGATGGAAATCGCATTAGA
AGTGTTTGCTCGACGTGGTATTGGTCGCGGTGGTCACGCTGACATTGCAGAAATCGCCCAGGTTTCTGTAGCCACCGTGT
TTAACTACTTCCCAACCCGTGAAGATTTGGTTGATGATGTACTAAACTACGTGGTTCGTCAGTTCTCTAACTTCCTATCT
GATAATATCGACCTCGATATTCACGCGAAAGAAAACCTACGCAACCTAACTTCAGCGATGGTTGATCTGATTGTCAACGA
CTGTCACTGGTTGAAAGTTTGGTTTGAGTGGAGTGCTTCAACACGTGATGAAGTATGGCCCTTGTTCGTGACCACCAACC
GCACCAATCAACTGCTGGTTCAGAACATGTTTGTCAAAGCCATCGAGCGAGGTGAGGTGTGTGACGAACACGATCCTGCA
GATCTAGCAACACTGTTCCATGGTATTTGCTACTCATTGTTCGTACAGGCTAACCGTACTCAGGACGATGAGTCTGTGAA
TCGCCTGACACAAAGCTACCTAGATATGCTTTGCATCTACAAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
84 |
99.502 |
0.836 |
| hapR | Vibrio cholerae C6706 |
76.382 |
99.005 |
0.756 |
| hapR | Vibrio cholerae strain A1552 |
76.382 |
99.005 |
0.756 |