Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   CTT30_RS10600 Genome accession   NZ_CP024627
Coordinates   2274011..2275405 (-) Length   464 a.a.
NCBI ID   WP_239838170.1    Uniprot ID   A0A9Q8UQ64
Organism   Vibrio coralliilyticus strain SCSIO 43001     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2269011..2280405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTT30_RS10565 (CTT30_10590) moaE 2269710..2270162 (-) 453 WP_252036640.1 molybdopterin synthase catalytic subunit MoaE -
  CTT30_RS10570 (CTT30_10595) moaD 2270162..2270407 (-) 246 WP_239838175.1 molybdopterin synthase sulfur carrier subunit -
  CTT30_RS10575 (CTT30_10600) moaC 2270404..2270883 (-) 480 WP_252035144.1 cyclic pyranopterin monophosphate synthase MoaC -
  CTT30_RS10580 (CTT30_10605) moaB 2270895..2271407 (-) 513 WP_239865573.1 molybdenum cofactor biosynthesis protein B -
  CTT30_RS10585 (CTT30_10610) moaA 2271496..2272485 (-) 990 WP_239838172.1 GTP 3',8-cyclase MoaA -
  CTT30_RS10590 (CTT30_10615) yvcK 2272790..2273677 (+) 888 WP_252035145.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  CTT30_RS10595 (CTT30_10620) luxU 2273663..2274007 (-) 345 WP_252036641.1 quorum-sensing phosphorelay protein LuxU -
  CTT30_RS10600 (CTT30_10625) luxO 2274011..2275405 (-) 1395 WP_239838170.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  CTT30_RS10605 (CTT30_10630) uvrB 2275664..2277694 (-) 2031 WP_239838169.1 excinuclease ABC subunit UvrB -
  CTT30_RS10615 (CTT30_10650) - 2279359..2279679 (-) 321 WP_255905716.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 51736.03 Da        Isoelectric Point: 5.8826

>NTDB_id=254520 CTT30_RS10600 WP_239838170.1 2274011..2275405(-) (luxO) [Vibrio coralliilyticus strain SCSIO 43001]
MQHNTQTQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNFRTPDLILLDLRLPDMTGMDVLHAVKQKM
PDVPVIFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSHTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKDFVRLAPEVVSRFSQYEWPGNVRQLQNVLRNVVVLNNGENISLDMLPPPLNQPVENQI
RVDLQDKDSFSVHDIFPLWLTEKKAIEQAIQACEGNIPKAAGYLDVSPSTIYRKLQNWNTKETQ

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=254520 CTT30_RS10600 WP_239838170.1 2274011..2275405(-) (luxO) [Vibrio coralliilyticus strain SCSIO 43001]
ATGCAACACAATACGCAAACACAAAAGTCTAAATACCTTTTGATGGTGGAAGATACCGCATCGGTTGCGGCGTTGTATCG
ATCTTATCTCACCCCATTGGGTATCGACATCAATATTGTTGGTACTGGGCGCGATGCTATTGAAAGCCTCAACTTTCGCA
CTCCTGATTTAATTTTGTTGGATCTTCGCCTTCCCGACATGACGGGGATGGATGTTTTACATGCTGTAAAGCAGAAAATG
CCGGATGTGCCGGTGATCTTCATGACGGCTCATGGATCGATTGATACTGCTGTAGAAGCCATGCGTCATGGTGCGCAAGA
CTTCTTGATTAAGCCATGTGAAGCAGATCGTCTTCGTGTCACGGTGAACAATGCTATTCGTAAAGCAACCAAGCTTAAAA
ATGAAGCAGATAATCCCGGCAACCAGAATTATCAGGGGTTTATAGGCAGTAGCCACACTATGCAGGCTGTCTATCGTACC
ATTGACTCGGCGGCATCCAGTAAAGCCAGTATTTTTATCACTGGGGAAAGCGGTACCGGTAAAGAGGTCTGTGCTGAGGC
TATTCACGCCGCGAGTAAACGTGGTGATAAGCCGTTTATAGCGATCAACTGTGCGGCTATCCCCAAAGATCTGATTGAAA
GTGAACTGTTTGGCCATGTGAAGGGAGCTTTCACCGGCGCAGCCACTGATCGACAAGGTGCGGCTGAGTTGGCTGATGGA
GGCACGCTGTTCCTTGACGAGCTGTGTGAGATGGATCTGGATCTGCAAACTAAGCTACTACGCTTTATTCAGACGGGTAC
CTTCCAGAAAGTCGGCTCTTCGAAAATGAAAAGCGTCGATGTACGTTTCGTTTGTGCAACCAACCGAGACCCTTGGAAAG
AGGTGCAGGAAGGCCGCTTCCGTGAAGATTTGTATTATCGTTTATACGTGATTCCATTACATCTACCCCCTTTGAGGGAA
CGTGGCGATGATGTCATAGAAATTGCTTATTCTCTGCTAGGCTTTATGTCTAAAGAGGAAGGAAAAGACTTTGTCCGATT
AGCACCAGAAGTGGTGAGTCGATTCTCTCAATATGAGTGGCCTGGTAATGTTCGCCAGTTGCAGAATGTTCTGAGAAATG
TAGTCGTGCTCAATAATGGCGAAAATATCTCCTTGGATATGCTGCCGCCACCGTTGAATCAACCTGTGGAAAATCAGATT
AGGGTTGATCTGCAAGACAAGGACAGCTTTTCTGTGCATGACATTTTCCCTCTGTGGTTAACAGAGAAGAAAGCTATCGA
GCAAGCGATTCAGGCGTGCGAAGGAAATATCCCTAAAGCCGCAGGTTATTTGGATGTGAGTCCATCGACTATCTATCGCA
AGCTACAAAACTGGAATACAAAGGAAACACAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

88.393

96.552

0.853
  pilR Pseudomonas aeruginosa PAK

38.085

96.767

0.369

Multiple sequence alignment