Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CTT30_RS07085 Genome accession   NZ_CP024627
Coordinates   1465309..1466733 (-) Length   474 a.a.
NCBI ID   WP_252036489.1    Uniprot ID   A0A9Q9CX83
Organism   Vibrio coralliilyticus strain SCSIO 43001     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1460309..1471733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTT30_RS07065 (CTT30_07095) - 1461732..1462937 (+) 1206 WP_252036487.1 HD-GYP domain-containing protein -
  CTT30_RS07070 (CTT30_07100) cdd 1462986..1463873 (-) 888 WP_252036488.1 cytidine deaminase -
  CTT30_RS07075 (CTT30_07105) - 1464123..1464800 (-) 678 WP_239836523.1 CidB/LrgB family autolysis modulator -
  CTT30_RS07080 (CTT30_07110) - 1464800..1465165 (-) 366 WP_239836522.1 CidA/LrgA family protein -
  CTT30_RS07085 (CTT30_07115) sbcB 1465309..1466733 (-) 1425 WP_252036489.1 exodeoxyribonuclease I Machinery gene
  CTT30_RS07090 (CTT30_07120) - 1466873..1468246 (-) 1374 WP_252036490.1 L-cystine transporter -
  CTT30_RS07095 (CTT30_07125) - 1468438..1469124 (-) 687 WP_252036491.1 NAD(P)H-binding protein -
  CTT30_RS07100 (CTT30_07130) - 1469655..1470266 (+) 612 WP_239875700.1 flavin reductase family protein -
  CTT30_RS07105 (CTT30_07135) cobT 1470273..1471301 (+) 1029 WP_252036492.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54898.26 Da        Isoelectric Point: 4.9135

>NTDB_id=254516 CTT30_RS07085 WP_252036489.1 1465309..1466733(-) (sbcB) [Vibrio coralliilyticus strain SCSIO 43001]
MQREHQPTFFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPSDYLPSPEAALITGITPQVAESKGLPEP
EFIAKIHEQLSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACYALRPEGINWPENEEGFI
SFKLEHLSVANGIEHANAHDAMADVIATIEMAKKVKAAQPKLFDYFLSMRHKRKLNDLVDIVKMTPLMHVSGMLGRECNY
TSWVVPVAWHPTNQNAVIVVDLAKDPQPLLDLDVEQLNERLYTKHSELGPDELPVPIKLVHLNKCPILAPAKTLTAENAA
NIGIDREKCLQNLERLRQRPEIREKLNSLYSIEREYEKNDDVDTMLYDGFFSPADKTSMAIIRETDPENLSALDISFNDE
RIAPLLFRYRARHFPWTLDESEQQKWAAHCREYFESRIEDYMLNLENLVHEYESDEKKIAILKSVYQYVQKRVS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=254516 CTT30_RS07085 WP_252036489.1 1465309..1466733(-) (sbcB) [Vibrio coralliilyticus strain SCSIO 43001]
ATGCAACGAGAGCATCAACCTACGTTTTTTTTCTTCGATTATGAGACGTGGGGAACCAGCCCAGCAAAAGACAGACCGTC
TCAGTTTGCGGGAGTACGTACCGATATGGACTTCAATATCATAGGTGAACCTCTTGTTATCTACTGCCAACCGCCCTCAG
ATTATCTTCCTTCACCAGAAGCTGCGCTGATCACAGGTATTACACCTCAAGTTGCGGAATCGAAAGGCCTGCCAGAGCCT
GAGTTTATCGCCAAAATTCATGAGCAATTATCCACCCCCAACACCATCAACTTAGGTTACAACAGCATTCGATTTGATGA
CGAAGTGACTCGATACACCTGTTACCGGAATTTCATCGATCCATATGCGTGGAGCTGGCAAAACGGCAACTCTCGCTGGG
ACTTACTTGATGTGATGAGAGCTTGTTATGCTCTTCGCCCAGAAGGCATCAATTGGCCAGAAAATGAAGAAGGCTTCATC
AGTTTTAAGCTGGAACACTTATCCGTTGCAAATGGCATTGAACACGCGAATGCACACGATGCGATGGCCGATGTTATCGC
CACCATTGAGATGGCGAAAAAGGTCAAAGCTGCGCAACCAAAGCTTTTCGATTACTTCCTGAGTATGCGCCACAAGCGTA
AACTCAATGATCTTGTCGATATCGTAAAGATGACACCGCTTATGCACGTATCGGGTATGTTGGGGCGTGAATGCAATTAT
ACTAGCTGGGTAGTTCCGGTCGCTTGGCACCCAACCAATCAAAACGCAGTCATTGTGGTTGATTTGGCGAAAGATCCTCA
GCCGTTGTTGGATTTAGATGTAGAACAGCTTAATGAGCGTCTCTACACCAAACATTCTGAACTTGGCCCAGACGAACTGC
CTGTACCAATCAAACTTGTCCACCTCAACAAGTGCCCTATTTTGGCCCCAGCCAAAACATTAACTGCTGAGAATGCAGCT
AACATAGGCATTGACAGAGAAAAGTGCTTACAAAACCTTGAGCGACTTAGACAACGCCCAGAAATAAGAGAAAAACTCAA
TTCGCTATACAGTATCGAACGAGAATACGAAAAGAACGATGATGTCGATACCATGCTTTACGATGGTTTTTTCTCTCCAG
CTGATAAAACATCAATGGCAATAATCCGCGAAACGGATCCGGAGAATCTATCCGCTCTAGATATCTCATTCAATGATGAG
CGAATAGCCCCACTTTTATTCCGCTATCGCGCCAGACATTTTCCGTGGACATTGGACGAGAGTGAGCAACAAAAATGGGC
GGCACATTGCCGTGAGTACTTTGAAAGCCGAATTGAAGATTACATGTTGAATTTGGAAAACTTAGTTCACGAGTATGAAA
GTGACGAAAAAAAGATAGCTATCTTAAAATCTGTTTACCAATACGTCCAAAAGCGAGTATCTTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

78.769

99.367

0.783

Multiple sequence alignment