Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CTZ23_RS14065 Genome accession   NZ_CP024620
Coordinates   2908420..2909988 (+) Length   522 a.a.
NCBI ID   WP_087662535.1    Uniprot ID   -
Organism   Acinetobacter indicus strain SGAir0564     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2903420..2914988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTZ23_RS14045 (CTZ23_14105) - 2903869..2905173 (+) 1305 WP_016659702.1 homoserine dehydrogenase -
  CTZ23_RS14050 (CTZ23_14110) thrC 2905231..2906376 (+) 1146 WP_045796493.1 threonine synthase -
  CTZ23_RS14055 (CTZ23_14115) - 2906470..2907552 (-) 1083 WP_125523564.1 serine hydrolase -
  CTZ23_RS14060 (CTZ23_14120) - 2907770..2908405 (+) 636 WP_005181577.1 response regulator -
  CTZ23_RS14065 (CTZ23_14125) pilS 2908420..2909988 (+) 1569 WP_087662535.1 sensor histidine kinase Regulator
  CTZ23_RS14070 (CTZ23_14130) pilR 2910060..2911415 (+) 1356 WP_264757081.1 sigma-54-dependent transcriptional regulator Regulator
  CTZ23_RS14075 (CTZ23_14135) - 2911432..2912601 (-) 1170 WP_087662537.1 S41 family peptidase -
  CTZ23_RS14080 (CTZ23_14140) gpmI 2912625..2914172 (-) 1548 WP_087662538.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 60033.70 Da        Isoelectric Point: 7.1912

>NTDB_id=254452 CTZ23_RS14065 WP_087662535.1 2908420..2909988(+) (pilS) [Acinetobacter indicus strain SGAir0564]
MDIRRTQAELNQYHLGLWYGAYRLIIAFCLLLIYLLTTQTLNHDYQHPRLYAASLVLYFIFSCAQLLYFRYVRHRIPLQL
TLIFSVDVLVLSSLTFALDGPSLHLSLLFVIAIFAATLLLEKSKALFITLVAMICVTYQHFVGTLLDFSSLDRIGQSALL
SFLFFIIYRFGQIAVRRFQILEHLNFSQSLELNRLKNINRYILEQTDMGYLVLDENCHIMVSNPAACHLLGINPLYAFDK
YPLYKVQPDLFQLLQFDELSNGEKFQFESQLSHFLIQIQVQKLVVPQQTLTLLVLQDARQINQRVQQLKLAALGQLSASI
AHEIRNPLAAIVQANRLLAGSNTDQQQMLSQMIDKQSQRIDKIIDDTLSMVKNKETTPVHIDLARFIPQLIQDDLADLAS
QIQVSQPEPLQILFDESQLRQVLINLIRNAQRHNAPDHPIELRLYRQQDTVYMDVKDYGSGVASHDIRYLFQPFFSTEIS
GTGLGLYLSHSFCEANRAKLRYVEQKQGACFRIECSPVDVNK

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=254452 CTZ23_RS14065 WP_087662535.1 2908420..2909988(+) (pilS) [Acinetobacter indicus strain SGAir0564]
ATGGATATCCGCCGTACGCAAGCTGAACTGAACCAGTACCATCTCGGGCTATGGTACGGGGCGTATCGGCTGATAATTGC
CTTCTGTTTGCTGCTGATTTATTTACTCACCACTCAAACTCTCAATCATGATTATCAGCATCCACGGCTGTATGCCGCCA
GTCTGGTGCTGTATTTTATTTTTAGCTGTGCCCAGCTGCTGTATTTTCGCTATGTCCGGCACAGAATTCCGCTACAACTC
ACGCTAATTTTCAGTGTTGATGTACTGGTGCTCAGCAGCCTGACCTTTGCGCTGGATGGACCGAGCCTGCATTTAAGCCT
GCTGTTTGTGATTGCGATTTTCGCCGCGACGTTATTGCTGGAAAAAAGCAAGGCGCTGTTCATTACCCTGGTGGCAATGA
TTTGTGTCACCTATCAGCATTTTGTTGGCACATTACTGGATTTTTCCTCTCTGGATCGCATCGGGCAAAGTGCCCTGCTC
TCGTTCCTGTTTTTTATTATTTACCGTTTTGGCCAGATTGCTGTCCGCCGTTTCCAGATTCTGGAGCACCTGAACTTTTC
CCAATCACTGGAACTGAACCGGCTGAAGAATATTAACCGCTATATTCTGGAACAGACCGATATGGGCTATCTGGTGCTGG
ATGAAAACTGCCATATTATGGTCAGTAATCCGGCCGCCTGCCATTTGCTGGGCATCAATCCGCTGTATGCCTTCGACAAA
TATCCGCTGTATAAAGTACAGCCCGACCTGTTTCAATTATTGCAATTTGACGAGCTCTCTAACGGCGAAAAATTCCAGTT
TGAATCACAGCTGAGTCATTTCCTGATCCAGATACAGGTACAAAAGCTGGTGGTGCCGCAGCAGACCTTAACCTTGCTGG
TGCTGCAGGATGCACGGCAAATCAACCAGCGCGTGCAGCAACTGAAACTGGCAGCACTGGGCCAGCTTTCGGCCAGTATT
GCCCATGAAATCCGTAATCCGCTGGCGGCGATTGTCCAGGCCAATCGCCTGCTGGCCGGCAGCAATACCGATCAGCAGCA
GATGCTGAGCCAGATGATTGACAAGCAGTCGCAGCGCATCGACAAGATCATTGATGACACCCTGAGCATGGTGAAAAATA
AGGAAACCACACCGGTGCACATTGATCTGGCACGTTTTATTCCGCAGCTGATCCAGGATGATCTGGCCGATCTGGCCAGC
CAGATTCAGGTCAGCCAGCCCGAACCCTTGCAGATTCTGTTTGATGAATCCCAGCTGCGTCAGGTGCTGATTAACCTGAT
CCGTAATGCCCAGCGCCACAATGCGCCAGATCATCCGATTGAACTGCGACTTTATCGCCAGCAGGACACGGTCTATATGG
ATGTCAAAGATTATGGCAGCGGTGTGGCTTCACATGATATTCGCTACCTGTTTCAACCATTTTTTAGTACCGAAATTAGT
GGAACTGGTTTAGGATTATACTTATCACATAGTTTCTGCGAGGCCAATCGGGCCAAGTTGCGCTATGTAGAACAAAAACA
AGGAGCATGTTTCAGGATTGAATGCTCACCTGTTGACGTAAATAAATAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.01

96.743

0.571

Multiple sequence alignment